|
1
|
1 <tool id="rgi" name="rgi" version="4.0.3">
|
|
|
2 <requirements>
|
|
|
3 <requirement type="package" version="4.0.3">rgi</requirement>
|
|
|
4 <requirement type="package" version="2.7">python</requirement>
|
|
|
5 </requirements>
|
|
|
6 <command detect_errors="exit_code"><![CDATA[
|
|
|
7 rgi load -i $__tool_directory__/card202.json --local && rgi main -t contig -a BLAST -i $input -o rgiResult -n "\${GALAXY_SLOTS:-4}" --local --clean
|
|
|
8 ]]></command>
|
|
|
9
|
|
|
10 <inputs>
|
|
|
11 <param type="data" name="input" format="fasta" />
|
|
|
12 </inputs>
|
|
|
13 <outputs>
|
|
|
14 <data name="rgiResultTsv" format="tabular" from_work_dir="rgiResult.txt"/>
|
|
|
15 </outputs>
|
|
|
16 <help>
|
|
|
17 runs rgi
|
|
|
18 </help>
|
|
|
19 <citations>
|
|
|
20 <citation type="bibtex">
|
|
|
21 @misc{cpo,
|
|
|
22 author = {j, j},
|
|
|
23 year = {2018},
|
|
|
24 title = {cpo_prediction},
|
|
|
25 publisher = {j},
|
|
|
26 journal = {j of j},
|
|
|
27 url = {https://bfjia.net,
|
|
|
28 }</citation>
|
|
|
29 </citations>
|
|
|
30 </tool> |
