Mercurial > repos > jjjjia > cpo_prediction
comparison cpo_galaxy_predictions.xml @ 12:4b2738bc81ed draft
planemo upload
| author | jjjjia |
|---|---|
| date | Fri, 24 Aug 2018 19:10:42 -0400 |
| parents | cabceaa239e4 |
| children | a14b12a71a53 |
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| 11:8aaa4001383b | 12:4b2738bc81ed |
|---|---|
| 5 <requirement type="package" version="3.6">python</requirement> | 5 <requirement type="package" version="3.6">python</requirement> |
| 6 </requirements> | 6 </requirements> |
| 7 <command detect_errors="exit_code"> | 7 <command detect_errors="exit_code"> |
| 8 <![CDATA[ | 8 <![CDATA[ |
| 9 python '$__tool_directory__/cpo_galaxy_prediction.py' | 9 python '$__tool_directory__/cpo_galaxy_prediction.py' |
| 10 '-i $ID' | 10 '-i $contig.element_identifier' |
| 11 '-m $mlst' | 11 '-m $mlst' |
| 12 '-c $mobsuitecontig' | 12 '-c $mobsuitecontig' |
| 13 '-f $mobsuiteaggregate' | 13 '-f $mobsuiteaggregate' |
| 14 '-a $abricate' | 14 '-a $abricate' |
| 15 '-r $rgi' | 15 '-r $rgi' |
| 17 '-s $__tool_directory__/scheme_species_map.tab' | 17 '-s $__tool_directory__/scheme_species_map.tab' |
| 18 '-p $plasmidfinder' | 18 '-p $plasmidfinder' |
| 19 ]]> | 19 ]]> |
| 20 </command> | 20 </command> |
| 21 <inputs> | 21 <inputs> |
| 22 <param type="text" name="ID"/> | 22 <param type="data" name="contig"/> |
| 23 <param type="data" name="mlst" format="tabular" /> | 23 <param type="data" name="mlst" format="tabular" /> |
| 24 <param type="data" name="mobsuitecontig" format="tabular" /> | 24 <param type="data" name="mobsuitecontig" format="tabular" /> |
| 25 <param type="data" name="mobsuiteaggregate" format="tabular" /> | 25 <param type="data" name="mobsuiteaggregate" format="tabular" /> |
| 26 <param type="data" name="abricate" format="tabular" /> | 26 <param type="data" name="abricate" format="tabular" /> |
| 27 <param type="data" name="rgi" format="tabular" /> | 27 <param type="data" name="rgi" format="tabular" /> |