diff abricate_cpo.xml @ 0:917a05a03ac9 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/abricate_cpo.xml	Tue Aug 14 17:18:49 2018 -0400
@@ -0,0 +1,35 @@
+<tool id="abricateCPO" name="abricateCPO" version="0.8">
+	<description>this tool parses stuff</description>
+	<requirements>
+		<requirement type="package" version="0.8">abricate</requirement>
+	</requirements>
+	<command detect_errors="exit_code">
+	<![CDATA[
+		abricate
+		--datadir=$__tool_directory__/
+		--db=cpo
+		'$input'
+		>report.tsv
+    ]]>
+	</command>
+    <inputs>
+        <param type="data" name="input" format="fasta" />
+    </inputs>
+    <outputs>
+        <data name="report" format="tabular" from_work_dir="report.tsv"/>
+    </outputs>
+	<help>
+		abricate with custom database
+	</help>
+	<citations>
+        <citation type="bibtex">
+@misc{cpo,
+  author = {j, j},
+  year = {2018},
+  title = {cpo_prediction},
+  publisher = {j},
+  journal = {j of j},
+  url = {https://bfjia.net,
+}</citation>
+    </citations>
+</tool>