Mercurial > repos > jjjjia > cpo_prediction

diff summary.tsv @ 0:917a05a03ac9 draft

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author jjjjia
date Tue, 14 Aug 2018 17:18:49 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/summary.tsv	Tue Aug 14 17:18:49 2018 -0400
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+ID	Expected Species	MLST Species	Sequence Type	MLST Scheme	Carbapenem Resistance Genes	Other AMR Genes	Total Plasmids	Plasmids ID	Num_Contigs	Plasmid Length	Plasmid RepType	Plasmid Mobility	Nearest Reference	Definitely Plasmid Contigs	Likely Plasmid Contigs
+ASDF	Kleb	Klebsiella pneumoniae	147	gapA(3);infB(4);mdh(6);pgi(1);phoE(7);rpoB(4);tonB(38);	OXA-181(plasmid)		4	770;190;2088;207;	23;1;1;1;	273261;5334;4444;4290;	IncFII,IncFII,IncFIB,IncFIB;ColRNAI_rep_cluster_1987;rep_cluster_1195;ColRNAI_rep_cluster_1987,rep_cluster_2050;	Conjugative;Mobilizable;Non-mobilizable;Non-mobilizable;	KY271404;CP018444;KY454616;CP018739;	00031;00019;00025;00035;00038;00039	00054;00033;00061;00062;00040;00063;00021;00050;00027;00052;00032;00045;00048;00047;00060;00049;00064;00029;00036;00028