# HG changeset patch
# User jjjjia
# Date 1535498611 14400
# Node ID 1543496b2db4fa9b242c397421c8779f7b643440
# Parent  47502be81f6abbdfa991cc535f2cd6282eb02195
planemo upload

diff -r 47502be81f6a -r 1543496b2db4 cpo_galaxy_prediction.py
--- a/cpo_galaxy_prediction.py	Tue Aug 28 15:19:33 2018 -0400
+++ b/cpo_galaxy_prediction.py	Tue Aug 28 19:23:31 2018 -0400
@@ -42,7 +42,7 @@
     parser.add_option("-e", "--expected", dest="expectedSpecies", default="NA/NA/NA", type="string", help="expected species of the isolate")
     parser.add_option("-s", "--mlst-scheme", dest="mlstScheme", default= "./scheme_species_map.tab", type="string", help="absolute file path to mlst scheme")
     parser.add_option("-p", "--plasmidfinder", dest="plasmidfinder", type="string", help="absolute file path to plasmidfinder ")
-    parser.add_options("-d", "--mash", dest="mash", type="string", help="absolute file path to mash plasmiddb result")
+    parser.add_option("-d", "--mash", dest="mash", type="string", help="absolute file path to mash plasmiddb result")
 
     #parallelization, useless, these are hard coded to 8cores/64G RAM
     #parser.add_option("-t", "--threads", dest="threads", default=8, type="int", help="number of cpu to use")