annotate rnaseq/cutadapt/test-data/1.sam @ 13:1efd1975a68d

cutadapters sample added
author jjkoehorst <jasperkoehorst@gmail.com>
date Sat, 21 Feb 2015 16:58:00 +0100
parents a712b378e090
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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11
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
1 @QNAME FLAG RNAME POS MAPQ CIGAR MRNM MPOS ISIZE SEQ QUAL OPT
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
2 1378_11_329 69 * 0 0 * * 0 0 AGACCGGGCGGGGTGGCGTTCGGT %##+'#######%###$#$##$(#
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
3 1378_11_329 133 * 0 0 * * 0 0 GTTCGTGGCCGGTGGGTGTTTGGG ###$$#$#$&#####$'$#$###$
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
4 1378_17_1788 69 * 0 0 * * 0 0 TGCCGTGTCTTGCTAACGCCGATT #'#$$#$###%%##$$$$######
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
5 1378_17_1788 133 * 0 0 * * 0 0 TGGGTGGATGTGTTGTCGTTCATG #$#$###$#$#######$#$####
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
6 1378_25_2035 69 * 0 0 * * 0 0 CTGCGTGTTGGTGTCTACTGGGGT #%#'##$#$##&%#%$$$%#%#'#
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
7 1378_25_2035 133 * 0 0 * * 0 0 GTGCGTCGGGGAGGGTGCTGTCGG ######%#$%#$$###($###&&%
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
8 1378_28_770 89 chr11.nib:1-134452384 72131356 37 17M1I5M = 72131356 0 CACACTGTGACAGACAGCGCAGC 00/02!!0//1200210!!44/1 XT:A:U CM:i:2 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:22
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
9 1378_28_770 181 chr11.nib:1-134452384 72131356 0 24M = 72131356 0 TTGGTGCGCGCGGTTGAGGGTTGG $$(#%%#$%#%####$%%##$###
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
10 1378_33_1945 113 chr2.nib:1-242951149 181247988 0 23M chr12.nib:1-132349534 41710908 0 GAGAGAGAGAGAGAGAGAGAGAG PQRVUMNXYRPUXYXWXSOSZ]M XT:A:R CM:i:0 SM:i:0 AM:i:0 X0:i:163148 XM:i:0 XO:i:0 XG:i:0 MD:Z:23
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
11 1378_33_1945 177 chr12.nib:1-132349534 41710908 0 23M chr2.nib:1-242951149 181247988 0 AGAGAGAGAGAGAGAGAGAGAGA SQQWZYURVYWX]]YXTSY]]ZM XT:A:R CM:i:0 SM:i:0 AM:i:0 X0:i:163148 XM:i:0 XO:i:0 XG:i:0 MD:Z:23
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
12 1378_34_789 69 * 0 0 * * 0 0 ATGGTGGCTGACGCGTTTGACTGT #$##%#$##$&$#%##$##$###$
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
13 1378_34_789 133 * 0 0 * * 0 0 GGGCTTGCGTTAGTGAGAGGTTGT ###%$%$%%###$####$###$#&
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
14 1378_35_263 115 chr16.nib:1-88827254 19671878 0 23M = 19671877 -1 AGAGAGAGAGAGAGAGAGAGTCT 77543:<55#"4!&=964518A> XT:A:R CM:i:2 SM:i:0 AM:i:0 X0:i:4 X1:i:137 XM:i:2 XO:i:0 XG:i:0 MD:Z:23
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
15 1378_35_263 179 chr16.nib:1-88827254 19671877 0 23M = 19671878 1 GAGAGAGAGAGAGAGAGAGAGTC LE7402DD34FL:27AKE>;432 XT:A:R CM:i:0 SM:i:0 AM:i:0 X0:i:265 XM:i:0 XO:i:0 XG:i:0 MD:Z:23
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
16 1378_43_186 69 * 0 0 * * 0 0 ATACTAGTTGGGACGCGTTGTGCT #$(4%$########$#$###$$$#
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
17 1378_43_186 133 * 0 0 * * 0 0 GCTAGGGTTTGGGTTTGCGGTGGG $%#$########%##%#$###'#'
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
18 1378_51_1671 117 chr2.nib:1-242951149 190342418 0 24M = 190342418 0 CTGGCGTTCTCGGCGTGGATGGGT #####$$##$#%#%%###%$#$##
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
19 1378_51_1671 153 chr2.nib:1-242951149 190342418 37 16M1I6M = 190342418 0 TCTAACTTAGCCTCATAATAGCT /<<!"0///////00/!!0121/ XT:A:U CM:i:2 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:22
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
20 1378_56_324 117 chr2.nib:1-242951149 80324999 0 24M = 80324999 0 TCCAGTCGCGTTGTTAGGTTCGGA #$#$$$#####%##%%###**#+/
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
21 1378_56_324 153 chr2.nib:1-242951149 80324999 37 8M1I14M = 80324999 0 TTTAGCCCGAAATGCCTAGAGCA 4;6//11!"11100110////00 XT:A:U CM:i:2 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:22
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
22 1378_56_773 69 * 0 0 * * 0 0 TGTCGTGAGGTCACTTATCCCCAT &%#%##%%#####&#$%##$%##$
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
23 1378_56_773 133 * 0 0 * * 0 0 TCTGGTCGGTTTCGGGGAGTGGAA ##%%#&$###$#$##%$####%%$
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
24 1378_62_2027 69 * 0 0 * * 0 0 CTTCCACGATCTGCTCGCTGTGGT (#&&$##$$#$%#%$$$#$###'#
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
25 1378_62_2027 133 * 0 0 * * 0 0 GTTGGCCTGGCCTGCCGTGCTGCG *##),/%##$)#%##1$#'%.#&#
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
26 1378_62_2029 69 * 0 0 * * 0 0 TCTGGGCTGTCTTCGGGTCGGTGT $%$$####$##$$#)##%%#$###
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
27 1378_62_2029 133 * 0 0 * * 0 0 GGCGGTGTGTGGTGCGGCTGTGCG /$$$=(####%####)$$%$-&%#
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
28 1378_67_1795 81 chr16.nib:1-88827254 26739130 0 23M chrY.nib:1-57772954 57401793 0 TGGCATTCCTGTAGGCAGAGAGG AZWWZS]!"QNXZ]VQ]]]/2]] XT:A:R CM:i:2 SM:i:0 AM:i:0 X0:i:3 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:23
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
29 1378_67_1795 161 chrY.nib:1-57772954 57401793 37 23M chr16.nib:1-88827254 26739130 0 GATCACCCAGGTGATGTAACTCC ]WV]]]]WW]]]]]]]]]]PU]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:23