Mercurial > repos > jjkoehorst > sapp
comparison gbk2rdf/gbktordf.xml @ 4:47d1b27466ee
EMBL testcase added
| author | jjkoehorst <jasperkoehorst@gmail.com> |
|---|---|
| date | Sat, 21 Feb 2015 13:49:11 +0100 |
| parents | db04e12b8779 |
| children |
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| 3:db04e12b8779 | 4:47d1b27466ee |
|---|---|
| 4 <requirement type='package' version="1.0">rdflib</requirement> | 4 <requirement type='package' version="1.0">rdflib</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <description>Genbank to RDF conversion</description> | 6 <description>Genbank to RDF conversion</description> |
| 7 <command interpreter="python3.4">gbktordf.py '-input' '$input' -output '$output' -sourcedb "$format" -format "$format"</command> | 7 <command interpreter="python3.4">gbktordf.py '-input' '$input' -output '$output' -sourcedb "$format" -format "$format"</command> |
| 8 <inputs> | 8 <inputs> |
| 9 <param name="input" type="data" format="gbk,gb,genbank" label="Genbank file"/> | 9 <param name="input" type="data" format="gbk,gb,genbank,embl" label="Genbank file"/> |
| 10 <param name="format" type="select" label="EMBL/GBK"> | 10 <param name="format" type="select" label="EMBL/GBK"> |
| 11 <option value="genbank" selected="true"> Genbank</option> | 11 <option value="genbank" selected="true"> Genbank</option> |
| 12 <option value="embl"> EMBL </option> | 12 <option value="embl"> EMBL </option> |
| 13 </param> | 13 </param> |
| 14 </inputs> | 14 </inputs> |
| 22 <param name="input" value="test-data/NC_010067.gbk"/> | 22 <param name="input" value="test-data/NC_010067.gbk"/> |
| 23 <output name="$output" file="NC_010067.rdf"/> | 23 <output name="$output" file="NC_010067.rdf"/> |
| 24 <output name="$format" value="genbank"/> | 24 <output name="$format" value="genbank"/> |
| 25 <output name="$sourcedb" value="genbank"/> | 25 <output name="$sourcedb" value="genbank"/> |
| 26 </test> | 26 </test> |
| 27 <test> | |
| 28 <param name="input" value="test-data/CP009049.embl"/> | |
| 29 <output name="$output" file="CP009049.rdf"/> | |
| 30 <output name="$format" value="embl"/> | |
| 31 <output name="$sourcedb" value="embl"/> | |
| 32 </test> | |
| 27 </tests> | 33 </tests> |
| 28 | 34 |
| 29 <help> | 35 <help> |
| 30 Genbank or EMBL to RDF conversion | 36 Genbank or EMBL to RDF conversion |
| 31 </help> | 37 </help> |