Mercurial > repos > jjkoehorst > sapp

comparison gbk2rdf.xml @ 36:2201c5d61f16 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 16d0bc526ad02361a7c13231d4c50479c42d8d0f-dirty
author jjkoehorst
date Mon, 04 Jul 2016 10:53:52 -0400
parents fa736576c7ed
children
comparison
equal deleted inserted replaced
35:fa736576c7ed 36:2201c5d61f16
1 <tool id="DGBK2RDF" name="EMBL/GBK to RDF" version="0.1"> 1 <tool id="DGBK2RDF" name="EMBL/GBK to RDF" version="0.1">
2 <description>Converts GenBank/EMBL files to RDF</description> 2 <description>Converts GenBank/EMBL files to RDF</description>
3 <requirements> 3 <requirements>
4 <container type="docker">jjkoehorst/sappdocker:GBK2RDF</container> 4 <container>jjkoehorst/sappdocker:GBK2RDF</container>
5 </requirements> 5 </requirements>
6 <command>java -jar /genbank2rdf/GenBank2RDF-0.0.1-SNAPSHOT-jar-with-dependencies.jar '-input' '$input' -output '$output' -source "$source" -format "$format" -identifier "${input.name}" -codon "$codon" </command> 6 <command>java -jar /genbank2rdf/GenBank2RDF-0.0.1-SNAPSHOT-jar-with-dependencies.jar '-input' '$input' -output '$output' -source "$source" -format "$format" -identifier "${input.name}" -codon "$codon" </command>
7 <inputs> 7 <inputs>
8 <param format="gbk,gb,genbank" label="Genbank file" name="input" type="data"/> 8 <param format="gbk,gb,genbank" label="Genbank file" name="input" type="data"/>
9 <param label="EMBL/GBK" name="format" type="select"> 9 <param label="EMBL/GBK" name="format" type="select">