Mercurial > repos > jjkoehorst > sapp
diff sappDocker/locustagger.xml @ 31:957156367442 draft
Uploaded
| author | jjkoehorst |
|---|---|
| date | Wed, 29 Jun 2016 01:36:58 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/sappDocker/locustagger.xml Wed Jun 29 01:36:58 2016 -0400 @@ -0,0 +1,18 @@ +<tool id="DLocus" name="Locus tags inference from GBK import" version="0.1"> + <description>Locus tagger inference from original annotation</description> + <requirements> + <container type="docker">jjkoehorst/sappdocker:LOCUSTAGGER</container> + </requirements> + <command interpreter="docker">java -jar /locustagger/target/LocusTagger-0.1-jar-with-dependencies.jar + '-input' '$input' -format 'TURTLE' -output '$output' -prefix '$prefix'</command> + <inputs> + <param format="ttl" label="RDF file" name="input" type="data"/> + <param format="text" label="PREFIX identifier" name="prefix" size="60" type="text"/> + </inputs> + <outputs> + <data format="ttl" label="LocusTagger: ${input.name}" name="output"/> + </outputs> + <help>Locus tag inference from original genbank/embl that was converted + to RDF + </help> +</tool> \ No newline at end of file