Mercurial > repos > jjkoehorst > sapp

diff sappDocker/swisscog.xml @ 31:957156367442 draft

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author jjkoehorst
date Wed, 29 Jun 2016 01:36:58 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/sappDocker/swisscog.xml	Wed Jun 29 01:36:58 2016 -0400
@@ -0,0 +1,17 @@
+<tool id="DSwissCog" name="Swissprot COG annotation" version="1.0.0">
+	<description/>
+	<requirements>
+		<container type="docker">jjkoehorst/sappdocker:SWISSCOG</container>
+	</requirements>
+	<command interpreter="docker">java -jar /swisscog/target/SwissCog-0.0.1-SNAPSHOT-jar-with-dependencies.jar
+		-input $input -output $output -format TURTLE
+	</command>
+	<inputs>
+		<param format="ttl" label="genome ttl with orf prediction" name="input" type="data"/>
+	</inputs>
+	<outputs>
+		<data format="ttl" label="SWISSCOG: ${input.name}" name="output"/>
+	</outputs>
+	<help/>
+	<citations/>
+</tool>
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