Mercurial > repos > jjkoehorst > sapp
diff rnaseq/cutadapt/test-data/maf_thread_for_species.dat @ 11:a712b378e090
cutadapt added
author | jjkoehorst <jasperkoehorst@gmail.com> |
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date | Sat, 21 Feb 2015 16:33:42 +0100 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/rnaseq/cutadapt/test-data/maf_thread_for_species.dat Sat Feb 21 16:33:42 2015 +0100 @@ -0,0 +1,17 @@ +##maf version=1 +a score=0.0 +s hg17.chr7 127471195 676 + 158628139 gtttgccatcttttgctgctctagggaatccagcagctgtcaccatgtaaacaagcccaggctagaccaGTTACCCTCATCATCTTAGCTGATAGCCAGCCAGCCACCACAGGCAtgagtcaggccatattgctggacccacagaattatgagctaaataaatagtcttgggttaagccactaagttttaggcatagtgtgttatgtaTCTCACAAACATATAAGACTGTGTGTTTGTTGACTGGAGGAAGAGATGCTATAAAGACCACCTTTTAAAACTTCCCAAATACTGCCACTGATGTCCTGATGGAGGTATGAAAACATCCACTAAAATTTGTGGTTTATTCATTTTTCATTATTTTGTTTAAGGAGGTCTATAGTGGAAGAGGGAGATATTTGGggaaattttgtatagactagctttcacgatgttagggaattattattgtgtgataatggtcttgcagttacacagaaattcttccttattttttgggaagcaccaaagtagggataaaatgtcatgatgtgtgcaatacactttaaaatgtttttgccaaaataattaatgaagcaaatatggaaaataataattattaaatctaggtgatgggtatattgtagttcactatagtattgcacacttttctgtatgtttaaatttttcatttaaaaa +s panTro1.chr6 129885076 676 + 161576975 gtttgccatcttttgctgctcttgggaatccagcagctgtcaccatgtaaacaagcccaggctagaccaGTTACCCTCATCATCTTAGCTGATAGCCAGCCAGCCACCACAGGCAtgagtcaggccatattgctggacccacagaattatgagctaaataaatagtcttgggttaagccactaagttttaggcatagtgtgttatgtaTCTCACAAACATATAAGACTGTGTGTTTGTTGACTGGAGGAAGAGATGCTATAAAGACCACCTTTTGAAACTTCCCAAATACTGCCACTGATGTCCTGATGGAGGTATGAAAACATCCACTAAAATTTGTGGTTTATTCGTTTTTCATTATTTTGTTTAAGGAGGTCTATAGTGGAAGAGGGAGACATTTGGggaaattttgtatagactagctttcacgatgttagggagttattattgtgtgataatggtcttgcagttacacagaaattcttccttattttttgggaaacaccaaagtagggataaaatgtcatgatgtgtgcaatacgctttaaaatatttttgccaaaataattaatgaagcaaatatggaaaataataattattaaatctaggtgatgggtatattgtagttcactatagtattgcacacttttctgtatgtttaaaattttcatttaaaaa + +a score=0.0 +s hg17.chr7 127471872 375 + 158628139 ctttgagctagacaccaggctatgagctaggagcatagcaatgaccaaatagactcctaccaactcaaagaatgcacattctCTGGGAAACATGTTTCCATTAGGAAGCCTCGAATGCAATGTGACTGTGGTCTCCAGGACCTGTGTGATCCTGGCTTTTCCTGTTCCCTCCGCATCATCACTGCAGGTGTGTTTTCCCAAGTTTTAAACATTTACCTTCCCAGTGGCCTTGCGTCTAGAGGAATCCCTGTATAGTGGTACATGAATATAACACATAACAAAAATCATCTCTATGGTGTGTGTTGTTCCTGGGGTTCAattcagcaaattttccctgggcacccatgtgttcttggcactggaaaagtaccggga +s panTro1.chr6 129885753 375 + 161576975 ctttgagctagacaccaggctatgagctaggagcatagcaatgaccaaatagactcctaccaactcaaagaatgcacattctCTGGGAAACATGTTTCCATTAGGAAGCCTCGAATGCAATGTGACTGTGGTCTCCAGGACATGTGTGATCCTGGCTTTTCCTGTTCCCTCTGCATCATCACTGCAGGTGTATTTTCCCAAGTTTTAAACATTTACCTTCCCAGTGGCCTTGCGTCTAGAGGAATCCCTGTATAGTGGTACATGAATATAACACATAACAAAAATCATCTCTATGGTGTGTGTTGTTCCTGGGGTTCAattcagcaaatttttcctgggcacccatgtgttcttggcactggaaaagtaccggga + +a score=0.0 +s hg17.chr7 127472258 423 + 158628139 gatggcccaatccctgtcctcttaaaacctaagggaggagaTGGAAAGGGGCACCCAACCCAGACTGAGAGACAGGAATTAGCTGCAAGGGGAACTAGGAAAAGCTTCTTTAAGGATGGAGAGGCCCTAGTGGAATGGGGAGATTCTTCCGGGAGAAGCGATGGATGCACAGTTGGGCATCCCCACAGACGGACTGGAAAGAAAAAAGGCCTGGAGGAATCAATGTGCAATGTATGTGTGTTCCCTGGTTcaagggctgggaactttctctaaagggccaggtagaaaacattttaggctttctaagccaaggcaaaattgaggatattacatgggtacttatacaacaagaataaacaatttacacaattttttgttgacagaattcaaaactttatagacacagaaatgcaaatttcctgt +s panTro1.chr6 129886139 423 + 161576975 gatggcccaatccctgtcctcttaaaacctaagggaggagaTGGAAAGGGGCACCCAACCCAGACTGAGAGACAGGAATTAGCTGCAAGGGGAACTAGGAAAAGCTTCTTTAAGGATGGAGAGACCCTAGTGGAATGGGGAGATTCTTCCGGGAGAAGCGATGGATGCGCAGTTGGGCATCCCCACAGACGGACTGGAAAGAAAAAAGGCCTGGAGGAATCAATGTGCAATGTATGTGTGTTCCCTGGTTcaagggctgggaactttctctaaagggccaggtagaaaacattttaggctttctaagccaaggcaaaattgaggatattacatgggtacttatacaacaagaataaacaatttacacaattttttgttgacagaattcaaaactttatagacacagaaatgtaaatttcctgt + +a score=0.0 +s hg17.chr7 127473809 428 + 158628139 tttttttttcaaacttttacaaatgtagaaaccattcttagcttttgggcattaccaaacccggcagtggcaggctcggttcaccaacgtcatttgcagttccccgCTTTATGTTATGGgttttgttttgttttgtttttttt-attgagacagagtttcactcttgttgcccaggctgtagtgcaatggtctgatcttggctcactgcaacctccacttcccaggttcaagccattctcctgcctcagcctctcaagtagctgggattacagacactcaccaccacacctggctaattttgtatttttagtagagatgaggtttcaccatgttggccaggctggtctcgaaatcctgacctcaggtgatccacccaccttggcctcccaaagtgctgggattacaggcttgagctaccacgcctggct +s panTro1.chr6 129887686 415 + 161576975 tttttttttcaaacttttacaaatgtagaaaccattcttagcttttgggcattaccaaacccggcagtggAAGGCTCGGTTCACCAACATCATTTGCAGTTCCCCGCTTTATATTATGGGttttttttttttttttttttttttattgagacagagtttcactcttgttgcccaggctgtagtg--------------tggctcactgcaacctccacttcccaggttcaagccattctcctgcctcagcctctcaagtagctgggattacagacactcaccaccacacctggctaattttgtatttttagtagagatgaggtttcatcatgttggccaggctggtctcgaaatcctgacctcaggtgatccacccaccttggcctcccaaagtgctgggattacaggcttgagctaccacgcctggct +