Mercurial > repos > jjkoehorst > sapp
view gbk2rdf/gbktordf.xml @ 19:1d78a849ad70
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author | jjkoehorst |
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date | Sat, 21 Feb 2015 11:26:51 -0500 |
parents | 47d1b27466ee |
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<tool id="SAPP_genbank_to_ttl" name="EMBL/GBK to RDF" version="0.1"> <requirements> <requirement type='package' version="3.4">python</requirement> <requirement type='package' version="1.0">rdflib</requirement> </requirements> <description>Genbank to RDF conversion</description> <command interpreter="python3.4">gbktordf.py '-input' '$input' -output '$output' -sourcedb "$format" -format "$format"</command> <inputs> <param name="input" type="data" format="gbk,gb,genbank,embl" label="Genbank file"/> <param name="format" type="select" label="EMBL/GBK"> <option value="genbank" selected="true"> Genbank</option> <option value="embl"> EMBL </option> </param> </inputs> <outputs> <data format="rdf" name="output" label="GBKttl: ${input.name}" /> </outputs> <tests> <test> <param name="input" value="test-data/NC_010067.gbk"/> <output name="$output" file="NC_010067.rdf"/> <output name="$format" value="genbank"/> <output name="$sourcedb" value="genbank"/> </test> <test> <param name="input" value="test-data/CP009049.embl"/> <output name="$output" file="CP009049.rdf"/> <output name="$format" value="embl"/> <output name="$sourcedb" value="embl"/> </test> </tests> <help> Genbank or EMBL to RDF conversion </help> </tool>