Mercurial > repos > jjkoehorst > sapp
view rnaseq/cutadapt/test-data/4.maf @ 13:1efd1975a68d
cutadapters sample added
| author | jjkoehorst <jasperkoehorst@gmail.com> |
|---|---|
| date | Sat, 21 Feb 2015 16:58:00 +0100 |
| parents | a712b378e090 |
| children |
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##maf version=1 a score=121487.000000 s hg17.chr7 127471195 331 + 158628139 gtttgccatcttttgctgctctagggaatccagcagctgtcaccatgtaaacaagcccaggctagaccaGTTACCCTCATC---ATCTTAGCTGATAGCCAGCCAGCCACCACAGGCAtgagtcaggccatattgctggacccacagaattatgagctaaataaatagtcttgggttaagccactaagttttaggcatagtgtgttatgtaTCTCACAAACATATAAGACTGTGTGTTTGTTGACTGGAGGAAGAGATGCTATAAAGACCACCTTTTAAAACTTCCCAAATACTGCCACTGATGTCCTGATGGAGG-------------------------------------------------------TATGAA---------AACATCCACTAA s panTro1.chr6 129885076 331 + 161576975 gtttgccatcttttgctgctcttgggaatccagcagctgtcaccatgtaaacaagcccaggctagaccaGTTACCCTCATC---ATCTTAGCTGATAGCCAGCCAGCCACCACAGGCAtgagtcaggccatattgctggacccacagaattatgagctaaataaatagtcttgggttaagccactaagttttaggcatagtgtgttatgtaTCTCACAAACATATAAGACTGTGTGTTTGTTGACTGGAGGAAGAGATGCTATAAAGACCACCTTTTGAAACTTCCCAAATACTGCCACTGATGTCCTGATGGAGG-------------------------------------------------------TATGAA---------AACATCCACTAA i panTro1.chr6 C 0 C 0 s rheMac2.chr3 165787989 330 + 196418989 gcttgccatcttttgatgctcttgggaatccagcagctgtcaccat-taaacaagcccaggctagaccaGTTACCCTCATC---ATCTTAGCTGATAGCCAGCCAGCCACCATAGGCAtgagtcaggccatagtgctggacccacagaattatgagctaaataagtagtgttgggttaagtcactaagttttaggcatagtgtgttatgtagcTCACAAACATATAAGACTGTGTGTTTTTTGACTGGAGGAAGAGATGCCATAAAGACCACCTTTTGAAACTTCTCAAATACTGCCATTGATGTGCTGATGGAGG-------------------------------------------------------TATGAA---------AACATCCACTAA i rheMac2.chr3 C 0 C 0 s rn3.chr4 56178191 282 + 187371129 CTTCACTCTCATTTGCTGTT----------------CTGTCACTATGGAGACAAACACAGGCTAGCCCAGTTACTATCTTGATCACAGCAGCTGT----CAGCTAGCTGCCACTCACAGGAATAAGGCCATACCATT-GATCCACTGAACCTTGATCTAGGAATTTGGC----------------------TGGGGCCAGTTTGCGGTGTCACTCATGA--CTCTAAGATTGTGTGTTTG----CTCCAGGAAGAGACGGCAAGAGGATTACCTTTAAAAGGTTCGG-AGTCTAGCTGTAGACAGCCCAATGGG---------------------------------------------------------TATAAC---------AATACTCACTAA i rn3.chr4 C 0 I 3727 s mm7.chr6 28984529 357 + 149646834 CTCCACTCTCGTTTGCTGTT----------------CTGTCACCATGGAAACAAACG-AGGGTGGTCCAGTTACTATCTTG---ACTGCAGCTGG----CAGTCAGTTGCCACT--CAGGAATAAGGCTATGCCATT-GATCCACTGAACCGTGATCTGGAAACCTGGCTGTTGTTT-------CAAGCCTTGGGGCCAGTTTGCGGTGTTACTCATGA--CTCTAAGATCGTGTGCTTG----CTGCAGGAAGAGACAGCAAGGGGGTTACATTTAAAAAGCCCCC-AGTTTAGCTATAGGCAGGCCAACAGGTGTAAAAATACTCACTAGTAATGGGCTGAACTCATGGAGGTAGCATTAGTGAGACACTGTAACTGTTTTTTTAAAAATCACTAA i mm7.chr6 C 0 C 0 e monDom2.scaffold_22 30245538 51850 - 46578359 I e echTel1.scaffold_309554 3896 34801 + 42008 I e dasNov1.scaffold_60130 12867 0 - 12883 I e loxAfr1.scaffold_2979 11430 3597 - 113413 I e canFam2.chr14 52842678 4750 - 63938239 I e bosTau2.scaffold741 358386 0 + 359342 I e oryCun1.scaffold_213837 7852 41067 + 53501 I a score=20323.000000 s hg17.chr7 127471526 58 + 158628139 AATTTGTGGTTTATTCATTTTTCATTATTTTGTTTAAGGAGGTCTATAGTGGAAGAGG s mm7.chr6 28984886 54 + 149646834 ----AACGTTTCATTGATTGCTCATCATTTAAAAAAAGAAATTCCTCAGTGGAAGAGG i mm7.chr6 C 0 I 5774 s rheMac2.chr3 165788319 58 + 196418989 AATTTGTGGTTTATTTATTTTTCATTATTTTGTTTAAGGAGGTCTATAGTGGAAGAGG i rheMac2.chr3 C 0 C 0 s panTro1.chr6 129885407 58 + 161576975 AATTTGTGGTTTATTCGTTTTTCATTATTTTGTTTAAGGAGGTCTATAGTGGAAGAGG i panTro1.chr6 C 0 C 0 e monDom2.scaffold_22 30245538 51850 - 46578359 I e echTel1.scaffold_309554 3896 34801 + 42008 I e dasNov1.scaffold_60130 12867 0 - 12883 I e loxAfr1.scaffold_2979 11430 3597 - 113413 I e canFam2.chr14 52842678 4750 - 63938239 I e rn3.chr4 56178473 3727 + 187371129 I e bosTau2.scaffold741 358386 0 + 359342 I e oryCun1.scaffold_213837 7852 41067 + 53501 I a score=85620.000000 s hg17.chr7 127471584 104 + 158628139 GAGATATTT-GGggaaatttt-gtatagactagctt--tcacgatgttagggaattattattgtgtgataatggtcttgcagttac-acagaaattcttcctta-ttttt s panTro1.chr6 129885465 104 + 161576975 GAGACATTT-GGggaaatttt-gtatagactagctt--tcacgatgttagggagttattattgtgtgataatggtcttgcagttac-acagaaattcttcctta-ttttt i panTro1.chr6 C 0 C 0 s rheMac2.chr3 165788377 105 + 196418989 GAGATATTT-GGggaaatttg-gtatagactagctt--tcatgatgtaagggagttatttttgtgtgataatggccctacagttac-acagaaattcttccttatttttt i rheMac2.chr3 C 0 C 0 s canFam2.chr14 52847428 108 - 63938239 gagatattt-gggggaatttgaatgtagtgttgctcttttgtgatgctaagaaattataattgtctgatgatagtctcgtggttatgggggaaatgcttcctta-ttttt i canFam2.chr14 I 4750 I 198 s bosTau2.chr4 19312415 103 - 69556449 -agacattg-ggtaaaattcaaatgcagactagctc----atgatgttaaagaattactcttgtgtggtaatggtcttgtgatagagatagaaatgcttcctta-ttttt i bosTau2.chr4 M 120077 I 1 s rn3.chr4 56182200 95 + 187371129 ----TATTTGGGGGAAATATG-ATGTGCA----CTT--CCATGATCTTAAAGAATTGCTACTGTTTGATAGTGATCTTATGGTTAA-ATAAAAAAAAT--CTTA-GTTGT i rn3.chr4 I 3727 C 0 s dasNov1.scaffold_256527 298 94 + 1837 GAGACATTT-GGAGAAATTTG-----------Aatt--tcatgatgttaaggaattacttttgtatgatgatggtcttgtggctat-gtagaatttcttccgtg-tttta i dasNov1.scaffold_256527 n 0 C 0 e monDom2.scaffold_22 30245538 51850 - 46578359 I e echTel1.scaffold_309554 3896 34801 + 42008 I e loxAfr1.scaffold_2979 11430 3597 - 113413 I e mm7.chr6 28984940 5774 + 149646834 I e oryCun1.scaffold_213837 7852 41067 + 53501 I a score=113319.000000 s hg17.chr7 127471688 183 + 158628139 tgggaagcaccaaagta-------gggataaaatgtcatgatgtgtgcaatacactttaaaatgtttttgccaaaa----------taattaa-------------------------tgaagc--aaatatg---gaaaataataattattaaatctaggt-----gatgggtatattgtagttcactatagtattgcacacttttctgtatgtttaaatttttcattta--------------------------aaaa- s panTro1.chr6 129885569 183 + 161576975 tgggaaacaccaaagta-------gggataaaatgtcatgatgtgtgcaatacgctttaaaatatttttgccaaaa----------taattaa-------------------------tgaagc--aaatatg---gaaaataataattattaaatctaggt-----gatgggtatattgtagttcactatagtattgcacacttttctgtatgtttaaaattttcattta--------------------------aaaa- i panTro1.chr6 C 0 C 0 s rheMac2.chr3 165788482 202 + 196418989 tgggaagcacaaaagta-------gggataaaatgtcatgatgtgtacaatatgctttaaaatatttttgccaaaa----------taattaa-------------------------tgaagc--aaatatg---gaaaataataactgttaaatctaggt-----gttgggtatattgcagttcattatgttattgcacacttttctgtgtgtttaaaattttcatttaaaaatatgttttaaaaatg-------aaaa- i rheMac2.chr3 C 0 C 0 s rn3.chr4 56182295 194 + 187371129 TAGAAAATACTCAAATATTTAGGGGCGTGACAATGTCACAGTGTCTGCAATTTGCTTTAAAGATTTTT-----AAA----------TATTTAAAAAAGTTTTAATAATTTTGAAAAACTGAAGCTACACTATG---GGAAGTGGTAATTGTTACATATGGGT-----AATAAGTAT-----AATTCGTTATATTAT-------TTTTC------TTAGAATTTTTCATTTG--------------------------AAAA- i rn3.chr4 C 0 I 959 s bosTau2.chr4 19312519 138 - 69556449 agataaacacttaagtattta---aggatgaaacgccctgatgtttgtaatttgctttagaatattttagccaaaa----------gaattaa-------------------------tgatgc--aaatatg--caaaaagagta--cgttaaacctaa-----------------------------------------------------atttgCGATTttcattta--------------------------aaaa- i bosTau2.chr4 I 1 I 19 s canFam2.chr14 52847734 160 - 63938239 agacacaaactgaagtattta---aggatgaaatgtcatgatgtttgcaattggctttaaaatattttagccaaaa-----------agtaaa-------------------------tgaagc--AAATATG--GGAAGACAATAATCATTAAATCTAGGT-----GATGCATAC---------------------------TTTTCCATATGTTTGAAATTTTCATTTA--------------------------AAAA- i canFam2.chr14 I 198 I 225 s dasNov1.scaffold_256527 393 232 + 1837 agacgcatgctgaagcatgta---aggataaaatgtcgtggtgtttgtaatttattctaaaacattttagccaaaaacaaataaataaataaa-------------------------tgaagc--aaatatgggggaaatgtttaattgttaaatctagatttaacacggtatataccgtgcttcattatactagtctctacttttccatgtgtttgaaattttCATTAAAATGTTTGTTTGTTGTCTGTTTTAATGAAAT i dasNov1.scaffold_256527 C 0 C 0 e monDom2.scaffold_22 30245538 51850 - 46578359 I e echTel1.scaffold_309554 3896 34801 + 42008 I e loxAfr1.scaffold_2979 11430 3597 - 113413 I e mm7.chr6 28984940 5774 + 149646834 I e oryCun1.scaffold_213837 7852 41067 + 53501 I a score=24225.000000 s hg17.chr7 127471871 39 + 158628139 actttgagctagacaccaggctatgagcta-ggagcatag s rheMac2.chr3 165788684 39 + 196418989 actttgagctagataccaggttatgagcta-ggagcatag i rheMac2.chr3 C 0 C 0 s panTro1.chr6 129885752 39 + 161576975 actttgagctagacaccaggctatgagcta-ggagcatag i panTro1.chr6 C 0 C 0 s bosTau2.chr4 19312676 39 - 69556449 tcttcgtgcaacgcacggggctatcaatgt-gggatacag i bosTau2.chr4 I 19 C 0 s canFam2.chr14 52848119 39 - 63938239 ACATCAtgctagatcctggactatgagctg-ggtatatag i canFam2.chr14 I 225 C 0 s dasNov1.scaffold_256527 625 40 + 1837 CCTTTGTGCTAGCCACTGGGATGAAAGCTAGGGAACACAG i dasNov1.scaffold_256527 C 0 C 0 e monDom2.scaffold_22 30245538 51850 - 46578359 I e echTel1.scaffold_309554 3896 34801 + 42008 I e loxAfr1.scaffold_2979 11430 3597 - 113413 I e rn3.chr4 56182489 959 + 187371129 I e mm7.chr6 28984940 5774 + 149646834 I e oryCun1.scaffold_213837 7852 41067 + 53501 I a score=94204.000000 s hg17.chr7 127471910 164 + 158628139 caatgaccaa----------------------------------------------------------------------------------------------atagactcctaccaa-ctc-aaagaatgcacattctCTG-GGAAACATGTTTCCATTAGGAAGCCTCGAATGCAATGTGACTGTGGTCTCCAGGACCTG-TGTGATCCTGGCTTTTCCTGTTCCCTCCG---CATCATCACTGCAGGTGTGTTTTCCCAAG s panTro1.chr6 129885791 164 + 161576975 caatgaccaa----------------------------------------------------------------------------------------------atagactcctaccaa-ctc-aaagaatgcacattctCTG-GGAAACATGTTTCCATTAGGAAGCCTCGAATGCAATGTGACTGTGGTCTCCAGGACATG-TGTGATCCTGGCTTTTCCTGTTCCCTCTG---CATCATCACTGCAGGTGTATTTTCCCAAG i panTro1.chr6 C 0 C 0 s rheMac2.chr3 165788723 162 + 196418989 caatgaccaa----------------------------------------------------------------------------------------------atagacccctaccga-ctc-aaagaatgtacattctTTG-GGAAACATGTTTCCATCAGAAAATCTCAAATGCAATGTGACTGGGGTCTCCAGGACCTG-TGTGAGCCTGGCTTTTCCTGTTCCCTCCA---CATCATCACTGCAGGTGTATTTTCCC--G i rheMac2.chr3 C 0 C 0 s mm7.chr6 28990714 161 + 149646834 caaaaaccaa------------------------------------------------------------------------------------------------aaaaACCTATAGC-CTC-ACAGGGTGGGTTGTCTTTG-AGGAACATGCATCCGCTAGAAAGTCCCAAGTACACTATGACAGTTG--CCCAGGCCCCGCCTTAAACCTGGTTTTCCTGGTTTCTTTCA---CATCATTACCACGAATATATTTCCTCAAG i mm7.chr6 I 5774 C 0 s rn3.chr4 56183448 257 + 187371129 --ATGACCAATATACACTGTTTACATGTATAGCATTGTGAATGGAGACATAAAAAGATAATCTAGCTTTGTGCTAGGTAGGTGCTGAGCTCTTAACAGTGCTGGGCAGAAACCTATAAC-CTC-ACAGGGTGGGTTGTCTTTG-AGGAGCGTGCTAACCCTAGGAAGTCTCAAATACAATGTGATGGTTGCCCCCAGGCACCACCTTGAACCTGGTCTTCCTGGTTTCTTTCA---CACCATTACCACAAATACATTTTCTCAGG i rn3.chr4 I 959 C 0 s bosTau2.chr4 19312715 168 - 69556449 atgtgaacaa---------------------------------------------------------------------------------------------aacggacccgtgtgggactcggcggagcacacagattttgcgggagCACGTTCCCGTTAGGAAGTCTCTGATGCAATACGACCGGTGCCTTCAGGACCTG-TG--AGGCTGACTTTCCTTA-CCCCTCCACACCATCATCAAGGCAGGTGTGATTTTCCAGG i bosTau2.chr4 C 0 I 12 s canFam2.chr14 52848158 168 - 63938239 cagtgaacaa---------------------------------------------------------------------------------------------aacagagccctgcagt-cttgatggagcacacaacctttg-gggaaCATGTTTCCATAAGAAAGTCTCCAATGTGATCTGA-TGGTGCCGCCAGGACCTA-TGTCAGCCTACCGTTCCATGTCCCCTCCACACCATCATCACTGCAGGTGTGTTTTCCCACA i canFam2.chr14 C 0 C 0 s dasNov1.scaffold_256527 665 121 + 1837 CAGTGAGCAA-----------------------------------------------------------------------------------------------CAGCCTGGCTCCGT-CC--GGGGGCCGCTCAGCAGCTC-GGGAGCGTGGAGACG---GGAAGTCTGTCACGCGATGCG-----------CTGGGCCCG------------CTGTTCCCGCCCCCCTCC---CCCC----------------TTTCCCAAG i dasNov1.scaffold_256527 C 0 C 0 e monDom2.scaffold_22 30245538 51850 - 46578359 I e echTel1.scaffold_309554 3896 34801 + 42008 I e loxAfr1.scaffold_2979 11430 3597 - 113413 I e oryCun1.scaffold_213837 7852 41067 + 53501 I a score=97835.000000 s hg17.chr7 127472074 184 + 158628139 TTTTAAA------CATTTACCTTCCCAGTGGCCTTGCGTCTAGAGGAATCCCTGTATAGTGGT-ACATGAATATAACACATAACAAA-AATCATCTCTATGGTGTGTGTTGTTCCTGGGGTTCAattcagcaaatttt-ccc-tgggcacccatgtgttcttggcactggaaaagtaccgggactgaaacagtt s panTro1.chr6 129885955 184 + 161576975 TTTTAAA------CATTTACCTTCCCAGTGGCCTTGCGTCTAGAGGAATCCCTGTATAGTGGT-ACATGAATATAACACATAACAAA-AATCATCTCTATGGTGTGTGTTGTTCCTGGGGTTCAattcagcaaatttt-tcc-tgggcacccatgtgttcttggcactggaaaagtaccgggactgaaacagtt i panTro1.chr6 C 0 C 0 s rheMac2.chr3 165788885 184 + 196418989 TTTTAAA------CATTTACTCTCCCAGTAGCCTTGCATCTCGAGGAATCCCTGTATAGTGGT-ACATGAATATAACACATAACAAA-AATCATCTGTACGGTGTGTGTTGTTCCTGGGGTTCAattcagcaaatttt-tcc-tgggcacccctgtgttcttggcactggaaaagtaccaggacttaaatagta i rheMac2.chr3 C 0 C 0 s mm7.chr6 28990875 150 + 149646834 TTTAAAGAAAGTACCCCCTCCTTTCCAGT-GCCTCAAATCTAGAAGAATATTCATAGTGAAGT-GC------------------------ACAGCCGGGTGGTGCATGGTA-ATCTGGAAGTCACCTCTGCAAATCTT-TCC----------------TGTTGGTGCTGTGAAGGCACCAGGACTTCAAGAGTA i mm7.chr6 C 0 C 0 s rn3.chr4 56183705 174 + 187371129 TTTAAAAGAAGT-CCCACTCCTTTCCAGT-GCCCTAGATCTAGAAGCACATTCATAATGATGT-ACAC-----TAACCC----------GACAGCTGTGTGGTATATGGTA-TCCCGGAAGTCACCTCAGCAAACCTT-TCCCGGGGAACCTACATGGTGTTGGTGCTGTGAAGGTACCAGGTTGTCAAGGGTA i rn3.chr4 C 0 C 0 s canFam2.chr14 52848326 170 - 63938239 TTTTAAA------TATCTGC-TTCCCGGTGGCCTTGAGTCTAGAGGAGTCCCCCCACTATGGTGGCACTAATACTGAAGGTCAGAAATAATCAGTTCTGTGGTGCATGTTGCCCCTGAGGTTCTGTTCGGGAAACTTC-TTC-TGAGCAC----ATGCACCTGGCACTGCAAACGTACCAGGA----------- i canFam2.chr14 C 0 I 195 s dasNov1.scaffold_256527 786 178 + 1837 TTTTAAA------AATTTACCTTCCCAGTGGCGGTGAATCCGGAGGAATACGGAAACTGGGGC-GCACTACCATGACACGTGTCAAA-AATCAGTTCCGTGGTCCGTGGAGGGCCTGGGGTTC------GAAAATCTTGTCC-CGAGCACCCCCGTGCGCCTGGCACCGCGACAGTGACAGGACTGAAGCGTG- i dasNov1.scaffold_256527 C 0 C 0 e monDom2.scaffold_22 30245538 51850 - 46578359 I e echTel1.scaffold_309554 3896 34801 + 42008 I e loxAfr1.scaffold_2979 11430 3597 - 113413 I e bosTau2.chr4 19312883 12 - 69556449 I e oryCun1.scaffold_213837 7852 41067 + 53501 I a score=14531.000000 s hg17.chr7 127472258 22 + 158628139 gatggccca-atccctgtcctct- s panTro1.chr6 129886139 22 + 161576975 gatggccca-atccctgtcctct- i panTro1.chr6 C 0 C 0 s rheMac2.chr3 165789069 22 + 196418989 gatggccca-atccctgtcctct- i rheMac2.chr3 C 0 C 0 s mm7.chr6 28991025 23 + 149646834 AATGGCAGAGGGCTCTGTTCTCT- i mm7.chr6 C 0 I 471 s rn3.chr4 56183879 23 + 187371129 AATGGCAGAGGCCCCTGTTCTCT- i rn3.chr4 C 0 C 0 s canFam2.chr14 52848691 22 - 63938239 GGAGACTTG-ATGCCTGCCTTCC- i canFam2.chr14 I 195 I 3 s dasNov1.scaffold_256527 964 23 + 1837 GACGGCCAG-ACCTCTGCCCTCGG i dasNov1.scaffold_256527 C 0 C 0 e monDom2.scaffold_22 30245538 51850 - 46578359 I e echTel1.scaffold_309554 3896 34801 + 42008 I e loxAfr1.scaffold_2979 11430 3597 - 113413 I e bosTau2.chr4 19312883 12 - 69556449 I e oryCun1.scaffold_213837 7852 41067 + 53501 I a score=182774.000000 s hg17.chr7 127472280 401 + 158628139 taaaacctaagggaggagaTGGAAAG-GGGCACCCAACCCAGACTGAGAGACAGGAATTAGCTGCAAGGGGAACTAGGAAAAGCTTCTTTA---AGGATG--GAGAGGCCCTA-GTGGAATGGGGAGATTCTTCCGGGAGAAGCGATGGATGCACAGTTGGGCATCCCCACAGACGGACTGGAAAGAAAAAAGGCCTGGAGGAATCA------ATGTGC-AATGTATGTGTGTTCCCTGGTTcaagggctgg-gaactttctcta--aagggccaggtagaaaacattttaggctttctaagccaagg---caaaattgaggat-attacatgggtacttatacaacaagaataaacaatt---tacacaa-ttttttgttgacagaattcaaaa---ctttat----agacac---agaaatgcaaatttcctgt s panTro1.chr6 129886161 401 + 161576975 taaaacctaagggaggagaTGGAAAG-GGGCACCCAACCCAGACTGAGAGACAGGAATTAGCTGCAAGGGGAACTAGGAAAAGCTTCTTTA---AGGATG--GAGAGACCCTA-GTGGAATGGGGAGATTCTTCCGGGAGAAGCGATGGATGCGCAGTTGGGCATCCCCACAGACGGACTGGAAAGAAAAAAGGCCTGGAGGAATCA------ATGTGC-AATGTATGTGTGTTCCCTGGTTcaagggctgg-gaactttctcta--aagggccaggtagaaaacattttaggctttctaagccaagg---caaaattgaggat-attacatgggtacttatacaacaagaataaacaatt---tacacaa-ttttttgttgacagaattcaaaa---ctttat----agacac---agaaatgtaaatttcctgt i panTro1.chr6 C 0 C 0 s rheMac2.chr3 165789091 401 + 196418989 taaaacctaatggaggagatggaATG-GGTCACCCAACCCGGACTGAGAGACAGGAATTAGCTGCAAGGGTAACCAGGACAAGCTTCTCTA---ATGATG--GAGAGACCCTA-GTGGAATGGGGAGATTCTTCTGGGAGAAGCGATGGATTCGTAGTTGGGCATCCCCACAGAGGGACTGGAAAGAAAAAAGACCTGGAGGAACCA------ATGTGC-AATGTATGTGTGTTTCCTGGTTcaagggctggcaaactttctcta--aagggccagatagaaaacattttaggctttgtaagccaagg---caaaatcgaggag-attacatgggtacttatacaacaagaataaacaatt---tccacaa--tttttattcacagaattcaaaa---ctttat----agacac---agaaatgtaaatttcctgt i rheMac2.chr3 C 0 C 0 s rn3.chr4 56183902 317 + 187371129 ------------------------------------GTCCATAGTCAAAG------------------------------AAGCCTCTCAG---ATGGAG--AGCAGGGCCTATGCAAAAGAGGGGGCTTCTGTAGGCAGAAGGGATGGACTAGCCTCCGGACATAGCCATAGAGAGGCTGGCAGGACTGAGACCCAGGAGAAGCCAGCGCAGGTGTGCGGGCGTGTGTATATTTCATAGTTTGCAGGTTGG----------------------------CAAACAATTCCTGCTTTGCAGGCCAAGA---GGAAACTGAAGGTGACCCCGTGAGTGCTTAC---ACAAGAGAAAACAAG-------ACAA-TTTTTGGTTGACCAAATTCAGAA---CTTTATTTGAGGATGC---TAAAGTTTAAATTTCTTTT i rn3.chr4 C 0 I 329 s canFam2.chr14 52848716 380 - 63938239 TACAGCCTGTGGGCAGAGGTGGGAAGAGGTCACGCAAGCCAGTTGGAATGAGGGGAGTTGGCTGGAAAGGTGACCAGGACAAGCTACTTCAACCAGGAAG--AAGAGACCCCG-GTG----------------CTTGGAGAAGGCCTGATTGAGCAGTCCTGCATGCCCGCCCAC-GACTGGCAGGAATAAAGACCCAGAAGAGCTA------ACGTGC-AATGTA------TTTTCTAGTTCCAgggttggcaaactttctctct-aagggtgggatgataaacattttaggcttttcagaccaaga---ggcgacatcagag-ggtatgtaggt---------acaagagggaaaagttgcccccggaa-ttttttg--gataaaattcaaaa---ctttacttagggatgc---caaaatgtaaacttcatat i canFam2.chr14 I 3 C 0 s dasNov1.scaffold_256527 987 414 + 1837 CTAAATCTCGCGGAGAAGGTGGAACA-GGTTACCCAAACCCGACCGAG-GAGGCGAGTTG---GAAACGGCGACTGGGACAAGCTCCCTCA---GAGACGGAGAGAGACCCCA-GTGGAAGGGGGGAGAGGCTCTTAGGGAAACGATGGGGGGACCCGCCCGCACCCGCACAGAGGCGCTGGCAGGCACAGCGGCCCCGAGGAGCCC------AGGAGC-AGGGC-TGTGT-TCCCCTGCATcaggggttggcaaactttttctgcaaagggccagatagtaaatattttaggctttgcaaaccaagaagtagaaagggaggcc-attatgtacgtatttatatagcaagagagaacattt---cccacaatttttttattgacagaatttaaaacttctttattgatgaacaccaaagaaacttgaatttcatat i dasNov1.scaffold_256527 C 0 C 0 e monDom2.scaffold_22 30245538 51850 - 46578359 I e echTel1.scaffold_309554 3896 34801 + 42008 I e loxAfr1.scaffold_2979 11430 3597 - 113413 I e mm7.chr6 28991048 471 + 149646834 I e bosTau2.chr4 19312883 12 - 69556449 I e oryCun1.scaffold_213837 7852 41067 + 53501 I a score=14948.000000 s hg17.chr7 127472681 34 + 158628139 aattttcccat---gagaactattcttcttttgtttt s rheMac2.chr3 165789492 34 + 196418989 aattttcacat---aagaactattcttcttttgtttt i rheMac2.chr3 C 0 C 0 s panTro1.chr6 129886562 34 + 161576975 aattttcccgt---gagaactattcttcttttgtttt i panTro1.chr6 C 0 C 0 s canFam2.chr14 52849096 35 - 63938239 aatggtcatgt--ccataactattcttcttttatttt i canFam2.chr14 C 0 C 0 s dasNov1.scaffold_256527 1401 32 + 1837 aattttcacatatcacgaagtatttttttttt----- i dasNov1.scaffold_256527 C 0 n 0 e monDom2.scaffold_22 30245538 51850 - 46578359 I e echTel1.scaffold_309554 3896 34801 + 42008 I e loxAfr1.scaffold_2979 11430 3597 - 113413 I e rn3.chr4 56184219 329 + 187371129 I e mm7.chr6 28991048 471 + 149646834 I e bosTau2.chr4 19312883 12 - 69556449 I e oryCun1.scaffold_213837 7852 41067 + 53501 I