view rnaseq/cutadapt/test-data/cf_maf_limit_to_species.dat @ 13:1efd1975a68d

cutadapters sample added
author jjkoehorst <jasperkoehorst@gmail.com>
date Sat, 21 Feb 2015 16:58:00 +0100
parents a712b378e090
children
line wrap: on
line source

##maf version=1
a score=85620.0
s hg17.chr7     127471584 104 + 158628139 GAGATATTT-GGggaaatttt-gtatagactagctt--tcacgatgttagggaattattattgtgtgataatggtcttgcagttac-acagaaattcttcctta-ttttt 
s panTro1.chr6  129885465 104 + 161576975 GAGACATTT-GGggaaatttt-gtatagactagctt--tcacgatgttagggagttattattgtgtgataatggtcttgcagttac-acagaaattcttcctta-ttttt 
i panTro1.chr6                            C 0 C 0                                                                                                        
s rheMac2.chr3  165788377 105 + 196418989 GAGATATTT-GGggaaatttg-gtatagactagctt--tcatgatgtaagggagttatttttgtgtgataatggccctacagttac-acagaaattcttccttatttttt 
i rheMac2.chr3                            C 0 C 0                                                                                                        
s canFam2.chr14  52847428 108 -  63938239 gagatattt-gggggaatttgaatgtagtgttgctcttttgtgatgctaagaaattataattgtctgatgatagtctcgtggttatgggggaaatgcttcctta-ttttt 
i canFam2.chr14                           I 4750 I 198                                                                                                   
s bosTau2.chr4   19312415 103 -  69556449 -agacattg-ggtaaaattcaaatgcagactagctc----atgatgttaaagaattactcttgtgtggtaatggtcttgtgatagagatagaaatgcttcctta-ttttt 
i bosTau2.chr4                            M 120077 I 1                                                                                                   
s rn3.chr4       56182200  95 + 187371129 ----TATTTGGGGGAAATATG-ATGTGCA----CTT--CCATGATCTTAAAGAATTGCTACTGTTTGATAGTGATCTTATGGTTAA-ATAAAAAAAAT--CTTA-GTTGT 
i rn3.chr4                                I 3727 C 0                                                                                                     

a score=113319.0
s hg17.chr7     127471688 183 + 158628139 tgggaagcaccaaagta-------gggataaaatgtcatgatgtgtgcaatacactttaaaatgtttttgccaaaataattaa-------------------------tgaagc--aaatatg-gaaaataataattattaaatctaggtgatgggtatattgtagttcactatagtattgcacacttttctgtatgtttaaatttttcattta-------------------aaaa 
s panTro1.chr6  129885569 183 + 161576975 tgggaaacaccaaagta-------gggataaaatgtcatgatgtgtgcaatacgctttaaaatatttttgccaaaataattaa-------------------------tgaagc--aaatatg-gaaaataataattattaaatctaggtgatgggtatattgtagttcactatagtattgcacacttttctgtatgtttaaaattttcattta-------------------aaaa 
i panTro1.chr6                            C 0 C 0                                                                                                                                                                                                                                       
s rheMac2.chr3  165788482 202 + 196418989 tgggaagcacaaaagta-------gggataaaatgtcatgatgtgtacaatatgctttaaaatatttttgccaaaataattaa-------------------------tgaagc--aaatatg-gaaaataataactgttaaatctaggtgttgggtatattgcagttcattatgttattgcacacttttctgtgtgtttaaaattttcatttaaaaatatgttttaaaaatgaaaa 
i rheMac2.chr3                            C 0 C 0                                                                                                                                                                                                                                       
s rn3.chr4       56182295 194 + 187371129 TAGAAAATACTCAAATATTTAGGGGCGTGACAATGTCACAGTGTCTGCAATTTGCTTTAAAGATTTTT-----AAATATTTAAAAAAGTTTTAATAATTTTGAAAAACTGAAGCTACACTATG-GGAAGTGGTAATTGTTACATATGGGTAATAAGTAT-----AATTCGTTATATTAT-------TTTTC------TTAGAATTTTTCATTTG-------------------AAAA 
i rn3.chr4                                C 0 I 959                                                                                                                                                                                                                                     
s bosTau2.chr4   19312519 138 -  69556449 agataaacacttaagtattta---aggatgaaacgccctgatgtttgtaatttgctttagaatattttagccaaaagaattaa-------------------------tgatgc--aaatatgcaaaaagagta--cgttaaacctaa------------------------------------------------atttgCGATTttcattta-------------------aaaa 
i bosTau2.chr4                            I 1 I 19                                                                                                                                                                                                                                      
s canFam2.chr14  52847734 160 -  63938239 agacacaaactgaagtattta---aggatgaaatgtcatgatgtttgcaattggctttaaaatattttagccaaaa-agtaaa-------------------------tgaagc--AAATATGGGAAGACAATAATCATTAAATCTAGGTGATGCATAC---------------------------TTTTCCATATGTTTGAAATTTTCATTTA-------------------AAAA 
i canFam2.chr14                           I 198 I 225                                                                                                                                                                                                                                   

a score=94204.0
s hg17.chr7     127471910 164 + 158628139 caatgaccaa----------------------------------------------------------------------------------------------atagactcctaccaa-ctc-aaagaatgcacattctCTG-GGAAACATGTTTCCATTAGGAAGCCTCGAATGCAATGTGACTGTGGTCTCCAGGACCTG-TGTGATCCTGGCTTTTCCTGTTCCCTCCG---CATCATCACTGCAGGTGTGTTTTCCCAAG 
s panTro1.chr6  129885791 164 + 161576975 caatgaccaa----------------------------------------------------------------------------------------------atagactcctaccaa-ctc-aaagaatgcacattctCTG-GGAAACATGTTTCCATTAGGAAGCCTCGAATGCAATGTGACTGTGGTCTCCAGGACATG-TGTGATCCTGGCTTTTCCTGTTCCCTCTG---CATCATCACTGCAGGTGTATTTTCCCAAG 
i panTro1.chr6                            C 0 C 0                                                                                                                                                                                                                                                                   
s rheMac2.chr3  165788723 162 + 196418989 caatgaccaa----------------------------------------------------------------------------------------------atagacccctaccga-ctc-aaagaatgtacattctTTG-GGAAACATGTTTCCATCAGAAAATCTCAAATGCAATGTGACTGGGGTCTCCAGGACCTG-TGTGAGCCTGGCTTTTCCTGTTCCCTCCA---CATCATCACTGCAGGTGTATTTTCCC--G 
i rheMac2.chr3                            C 0 C 0                                                                                                                                                                                                                                                                   
s rn3.chr4       56183448 257 + 187371129 --ATGACCAATATACACTGTTTACATGTATAGCATTGTGAATGGAGACATAAAAAGATAATCTAGCTTTGTGCTAGGTAGGTGCTGAGCTCTTAACAGTGCTGGGCAGAAACCTATAAC-CTC-ACAGGGTGGGTTGTCTTTG-AGGAGCGTGCTAACCCTAGGAAGTCTCAAATACAATGTGATGGTTGCCCCCAGGCACCACCTTGAACCTGGTCTTCCTGGTTTCTTTCA---CACCATTACCACAAATACATTTTCTCAGG 
i rn3.chr4                                I 959 C 0                                                                                                                                                                                                                                                                 
s bosTau2.chr4   19312715 168 -  69556449 atgtgaacaa---------------------------------------------------------------------------------------------aacggacccgtgtgggactcggcggagcacacagattttgcgggagCACGTTCCCGTTAGGAAGTCTCTGATGCAATACGACCGGTGCCTTCAGGACCTG-TG--AGGCTGACTTTCCTTA-CCCCTCCACACCATCATCAAGGCAGGTGTGATTTTCCAGG 
i bosTau2.chr4                            C 0 I 12                                                                                                                                                                                                                                                                  
s canFam2.chr14  52848158 168 -  63938239 cagtgaacaa---------------------------------------------------------------------------------------------aacagagccctgcagt-cttgatggagcacacaacctttg-gggaaCATGTTTCCATAAGAAAGTCTCCAATGTGATCTGA-TGGTGCCGCCAGGACCTA-TGTCAGCCTACCGTTCCATGTCCCCTCCACACCATCATCACTGCAGGTGTGTTTTCCCACA 
i canFam2.chr14                           C 0 C 0