Mercurial > repos > jjkoehorst > sapp
view rnaseq/cutadapt/test-data/gtf2bedgraph_in.gtf @ 13:1efd1975a68d
cutadapters sample added
| author | jjkoehorst <jasperkoehorst@gmail.com> |
|---|---|
| date | Sat, 21 Feb 2015 16:58:00 +0100 |
| parents | a712b378e090 |
| children |
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line source
chr1 Cufflinks exon 36425950 36426026 1000 - . gene_id "uc007aqa.1"; transcript_id "uc007aqa.1"; exon_number "21"; FPKM "4.8386844109"; frac "0.515875"; conf_lo "0.000000"; conf_hi "9.779040"; cov "0.274837"; chr1 Cufflinks exon 46891972 46892996 1000 - . gene_id "uc007axc.1"; transcript_id "uc007axc.1"; exon_number "9"; FPKM "8.4688567539"; frac "1.000000"; conf_lo "6.667227"; conf_hi "10.270487"; cov "0.481031"; chr1 Cufflinks exon 71654478 71654594 1000 - . gene_id "uc007bkb.1"; transcript_id "uc007bkb.1"; exon_number "4"; FPKM "0.4686878995"; frac "0.186704"; conf_lo "0.300747"; conf_hi "0.636629"; cov "0.026621"; chr1 Cufflinks transcript 72629845 72679706 1000 + . gene_id "uc007bks.1"; transcript_id "uc007bks.1"; FPKM "4.0695297327"; frac "1.000000"; conf_lo "2.473329"; conf_hi "5.665731"; cov "0.231149"; chr1 Cufflinks exon 75531753 75532000 1000 + . gene_id "uc007bpt.1"; transcript_id "uc007bpt.1"; exon_number "24"; FPKM "3.6392661141"; frac "1.000000"; conf_lo "2.391008"; conf_hi "4.887524"; cov "0.206710"; chr1 Cufflinks exon 123389482 123389564 1000 + . gene_id "uc007cju.1"; transcript_id "uc007cju.1"; exon_number "20"; FPKM "0.9948773061"; frac "1.000000"; conf_lo "0.105032"; conf_hi "1.884723"; cov "0.056509"; chr1 Cufflinks exon 129625990 129626119 1000 + . gene_id "uc007ckv.1"; transcript_id "uc007ckv.1"; exon_number "1"; FPKM "0.0003267777"; frac "0.004692"; conf_lo "0.000000"; conf_hi "0.000915"; cov "0.000019"; chr1 Cufflinks exon 132059397 132059512 1000 + . gene_id "uc007clw.1"; transcript_id "uc007clw.1"; exon_number "7"; FPKM "0.2051423010"; frac "0.886787"; conf_lo "0.000000"; conf_hi "0.509199"; cov "0.011652"; chr1 Cufflinks exon 175865141 175865308 1000 - . gene_id "uc007dsf.1"; transcript_id "uc007dsf.1"; exon_number "5"; FPKM "0.6544444010"; frac "1.000000"; conf_lo "0.068952"; conf_hi "1.239936"; cov "0.037172"; chr10 Cufflinks transcript 7399380 7400956 1000 - . gene_id "uc007eie.1"; transcript_id "uc007eie.1"; FPKM "2.1099978681"; frac "1.000000"; conf_lo "0.514989"; conf_hi "3.705006"; cov "0.119848"; chr10 Cufflinks exon 79784826 79784954 1000 - . gene_id "uc007gcr.1"; transcript_id "uc007gcr.1"; exon_number "2"; FPKM "1.2054582676"; frac "1.000000"; conf_lo "0.000000"; conf_hi "2.597402"; cov "0.068470"; chr10 Cufflinks exon 79820729 79820836 1000 + . gene_id "uc007gcy.1"; transcript_id "uc007gcy.1"; exon_number "2"; FPKM "1.8177911161"; frac "1.000000"; conf_lo "0.532419"; conf_hi "3.103164"; cov "0.103250"; chr10 Cufflinks transcript 105907395 106369573 1000 + . gene_id "uc007gyr.1"; transcript_id "uc007gyr.1"; FPKM "4.2493607936"; frac "0.247216"; conf_lo "3.727223"; conf_hi "4.771499"; cov "0.241364"; chr10 Cufflinks exon 119487061 119487172 1000 + . gene_id "uc007hep.1"; transcript_id "uc007hep.1"; exon_number "10"; FPKM "4.3105966126"; frac "0.341843"; conf_lo "3.127417"; conf_hi "5.493776"; cov "0.244842"; chr11 Cufflinks exon 29097093 29097209 1000 + . gene_id "uc007igs.1"; transcript_id "uc007igs.1"; exon_number "7"; FPKM "4.2530782301"; frac "1.000000"; conf_lo "2.700074"; conf_hi "5.806083"; cov "0.241575"; chr11 Cufflinks exon 69404158 69404264 1000 + . gene_id "uc007jqm.1"; transcript_id "uc007jqm.1"; exon_number "10"; FPKM "18.7450971965"; frac "0.685277"; conf_lo "11.773851"; conf_hi "25.716343"; cov "1.064721"; chr11 Cufflinks transcript 98249986 98261804 1000 - . gene_id "uc007lgh.1"; transcript_id "uc007lgh.1"; FPKM "2.1571271227"; frac "1.000000"; conf_lo "0.856331"; conf_hi "3.457924"; cov "0.122525"; chr11 Cufflinks exon 102210141 102211681 1000 - . gene_id "uc007lrp.1"; transcript_id "uc007lrp.1"; exon_number "1"; FPKM "0.8688186006"; frac "1.000000"; conf_lo "0.254471"; conf_hi "1.483166"; cov "0.049349"; chr11 Cufflinks transcript 105926400 105927243 1000 - . gene_id "uc007lya.1"; transcript_id "uc007lya.1"; FPKM "3.6706747247"; frac "1.000000"; conf_lo "0.000000"; conf_hi "8.861793"; cov "0.208494"; chr11 Cufflinks exon 106633966 106634066 1000 - . gene_id "uc007lzm.1"; transcript_id "uc007lzm.1"; exon_number "2"; FPKM "2.4729108195"; frac "0.689555"; conf_lo "0.805433"; conf_hi "4.140389"; cov "0.140461"; chr11 Cufflinks exon 120472427 120472492 1000 - . gene_id "uc007mtq.1"; transcript_id "uc007mtq.1"; exon_number "3"; FPKM "10.2380258574"; frac "0.356865"; conf_lo "4.499395"; conf_hi "15.976656"; cov "0.581520"; chr12 Cufflinks exon 100112717 100112852 1000 - . gene_id "uc007orn.1"; transcript_id "uc007orn.1"; exon_number "39"; FPKM "1.8669402513"; frac "0.154118"; conf_lo "1.707295"; conf_hi "2.026586"; cov "0.106042"; chr13 Cufflinks exon 8889564 8891614 1000 + . gene_id "uc007pkn.1"; transcript_id "uc007pkn.1"; exon_number "5"; FPKM "9.4402522582"; frac "1.000000"; conf_lo "6.745038"; conf_hi "12.135466"; cov "0.536206"; chr13 Cufflinks exon 13756207 13756380 1000 + . gene_id "uc007pmj.1"; transcript_id "uc007pmj.1"; exon_number "18"; FPKM "0.0574771218"; frac "0.793101"; conf_lo "0.000000"; conf_hi "0.140705"; cov "0.003265"; chr13 Cufflinks exon 93243918 93244083 1000 - . gene_id "uc007rkp.1"; transcript_id "uc007rkp.1"; exon_number "4"; FPKM "6.9802111138"; frac "1.000000"; conf_lo "3.858566"; conf_hi "10.101856"; cov "0.396476"; chr14 Cufflinks exon 13130096 13130170 1000 + . gene_id "uc007sfq.1"; transcript_id "uc007sfq.1"; exon_number "4"; FPKM "4.0381928600"; frac "1.000000"; conf_lo "2.254366"; conf_hi "5.822020"; cov "0.229369"; chr14 Cufflinks exon 32036106 32036250 1000 + . gene_id "uc007sxe.1"; transcript_id "uc007sxe.1"; exon_number "10"; FPKM "0.1289615781"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.386885"; cov "0.007325"; chr14 Cufflinks exon 56517080 56517223 1000 - . gene_id "uc007ubd.1"; transcript_id "uc007ubd.1"; exon_number "2"; FPKM "15.7683764379"; frac "0.548796"; conf_lo "8.949920"; conf_hi "22.586833"; cov "0.895643"; chr14 Cufflinks exon 62950942 62951013 1000 + . gene_id "uc007ugl.1"; transcript_id "uc007ugl.1"; exon_number "1"; FPKM "10.1138803585"; frac "1.000000"; conf_lo "6.480867"; conf_hi "13.746893"; cov "0.574468"; chr14 Cufflinks exon 66479007 66479052 1000 + . gene_id "uc007ujq.1"; transcript_id "uc007ujq.1"; exon_number "8"; FPKM "14.3011267395"; frac "1.000000"; conf_lo "10.806805"; conf_hi "17.795448"; cov "0.812304"; chr14 Cufflinks exon 70961619 70961783 1000 + . gene_id "uc007uoj.1"; transcript_id "uc007uoj.1"; exon_number "7"; FPKM "2.0814553995"; frac "1.000000"; conf_lo "1.231705"; conf_hi "2.931206"; cov "0.118227"; chr14 Cufflinks exon 96679222 96679434 1000 - . gene_id "uc007uuq.1"; transcript_id "uc007uuq.1"; exon_number "7"; FPKM "1.7614342028"; frac "1.000000"; conf_lo "0.851833"; conf_hi "2.671035"; cov "0.100049"; chr14 Cufflinks exon 99504388 99504488 1000 + . gene_id "uc007uvc.1"; transcript_id "uc007uvc.1"; exon_number "3"; FPKM "3.1573312214"; frac "0.277705"; conf_lo "2.620155"; conf_hi "3.694508"; cov "0.179336"; chr15 Cufflinks exon 12777808 12777962 1000 + . gene_id "uc007vic.1"; transcript_id "uc007vic.1"; exon_number "6"; FPKM "12.7118803258"; frac "0.653301"; conf_lo "7.807708"; conf_hi "17.616053"; cov "0.722034"; chr15 Cufflinks exon 28200049 28200282 1000 + . gene_id "uc007vjy.1"; transcript_id "uc007vjy.1"; exon_number "19"; FPKM "0.0608801712"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.146978"; cov "0.003458"; chr15 Cufflinks exon 34434714 34434889 1000 + . gene_id "uc007vlv.1"; transcript_id "uc007vlv.1"; exon_number "4"; FPKM "2.1698982510"; frac "1.000000"; conf_lo "1.049368"; conf_hi "3.290429"; cov "0.123250"; chr15 Cufflinks transcript 51709056 51716160 1000 + . gene_id "uc007vrc.1"; transcript_id "uc007vrc.1"; FPKM "5.0213279245"; frac "1.000000"; conf_lo "3.187798"; conf_hi "6.854858"; cov "0.285211"; chr15 Cufflinks exon 54880182 54880296 1000 - . gene_id "uc007vrt.1"; transcript_id "uc007vrt.1"; exon_number "14"; FPKM "9.7267082384"; frac "1.000000"; conf_lo "7.809774"; conf_hi "11.643643"; cov "0.552477"; chr15 Cufflinks exon 59176893 59177072 1000 - . gene_id "uc007vxs.1"; transcript_id "uc007vxs.1"; exon_number "11"; FPKM "4.5392702144"; frac "1.000000"; conf_lo "2.723562"; conf_hi "6.354978"; cov "0.257830"; chr15 Cufflinks exon 76426650 76426779 1000 - . gene_id "uc007wla.1"; transcript_id "uc007wla.1"; exon_number "3"; FPKM "3.5730073595"; frac "0.230550"; conf_lo "2.576136"; conf_hi "4.569879"; cov "0.202947"; chr15 Cufflinks exon 76533504 76533613 1000 + . gene_id "uc007wlt.1"; transcript_id "uc007wlt.1"; exon_number "4"; FPKM "3.3395072810"; frac "0.491112"; conf_lo "2.499197"; conf_hi "4.179818"; cov "0.189684"; chr15 Cufflinks exon 88963183 88963261 1000 - . gene_id "uc007xfl.1"; transcript_id "uc007xfl.1"; exon_number "3"; FPKM "1.5871531781"; frac "1.000000"; conf_lo "0.291248"; conf_hi "2.883058"; cov "0.090150"; chr15 Cufflinks exon 102455470 102455519 1000 - . gene_id "uc007xwk.1"; transcript_id "uc007xwk.1"; exon_number "13"; FPKM "0.2873090379"; frac "0.161741"; conf_lo "0.099159"; conf_hi "0.475459"; cov "0.016319"; chr16 Cufflinks transcript 3979123 3982204 1000 - . gene_id "uc007xzf.1"; transcript_id "uc007xzf.1"; FPKM "4.1992546925"; frac "0.467884"; conf_lo "2.835257"; conf_hi "5.563252"; cov "0.238518"; chr15 Cufflinks exon 102313591 102313719 1000 + . gene_id "uc007xvy.2"; transcript_id "uc007xvy.2"; exon_number "7"; FPKM "37.5792165910"; frac "0.297738"; conf_lo "34.688492"; conf_hi "40.469941"; cov "2.134498"; chr16 Cufflinks exon 4608598 4608818 1000 + . gene_id "uc007xzw.1"; transcript_id "uc007xzw.1"; exon_number "2"; FPKM "5.7793602049"; frac "1.000000"; conf_lo "4.036818"; conf_hi "7.521903"; cov "0.328267"; chr16 Cufflinks exon 20541820 20541939 1000 + . gene_id "uc007ypy.1"; transcript_id "uc007ypy.1"; exon_number "7"; FPKM "68.0268643583"; frac "1.000000"; conf_lo "60.085498"; conf_hi "75.968231"; cov "3.863924"; chr17 Cufflinks transcript 24857054 24858867 1000 + . gene_id "uc008axy.1"; transcript_id "uc008axy.1"; FPKM "22.0141466642"; frac "1.000000"; conf_lo "15.369306"; conf_hi "28.658988"; cov "1.250403"; chr17 Cufflinks exon 25379604 25380686 1000 - . gene_id "uc008bah.1"; transcript_id "uc008bah.1"; exon_number "1"; FPKM "1.7458387165"; frac "0.226783"; conf_lo "1.488719"; conf_hi "2.002959"; cov "0.099164"; chr17 Cufflinks exon 27159196 27159462 1000 + . gene_id "uc008bfe.1"; transcript_id "uc008bfe.1"; exon_number "2"; FPKM "1.7334774900"; frac "0.118977"; conf_lo "1.272113"; conf_hi "2.194842"; cov "0.098461"; chr18 Cufflinks exon 34787707 34787836 1000 + . gene_id "uc008ela.1"; transcript_id "uc008ela.1"; exon_number "7"; FPKM "5.0638001964"; frac "0.237331"; conf_lo "4.342098"; conf_hi "5.785503"; cov "0.287624"; chr18 Cufflinks exon 61371052 61371250 1000 - . gene_id "uc008fbu.1"; transcript_id "uc008fbu.1"; exon_number "4"; FPKM "0.1230526474"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.369158"; cov "0.006989"; chr18 Cufflinks exon 61167370 61167501 1000 - . gene_id "uc008fbi.1"; transcript_id "uc008fbi.1"; exon_number "12"; FPKM "2.4172869897"; frac "1.000000"; conf_lo "1.244731"; conf_hi "3.589843"; cov "0.137302"; chr18 Cufflinks exon 86630592 86630719 1000 + . gene_id "uc008fuz.1"; transcript_id "uc008fuz.1"; exon_number "6"; FPKM "2.2892787327"; frac "1.000000"; conf_lo "1.065608"; conf_hi "3.512950"; cov "0.130031"; chr19 Cufflinks exon 5603634 5603715 1000 - . gene_id "uc008gea.1"; transcript_id "uc008gea.1"; exon_number "2"; FPKM "2.1837193523"; frac "0.163446"; conf_lo "1.715120"; conf_hi "2.652319"; cov "0.124035"; chr2 Cufflinks exon 28404475 28404676 1000 + . gene_id "uc008iyn.1"; transcript_id "uc008iyn.1"; exon_number "15"; FPKM "10.9087431164"; frac "0.368384"; conf_lo "4.356515"; conf_hi "17.460972"; cov "0.619616"; chr2 Cufflinks exon 29770254 29770439 1000 + . gene_id "uc008jal.1"; transcript_id "uc008jal.1"; exon_number "12"; FPKM "7.2973656902"; frac "0.685974"; conf_lo "5.778526"; conf_hi "8.816206"; cov "0.414490"; chr2 Cufflinks exon 30002172 30002382 1000 + . gene_id "uc008jbj.1"; transcript_id "uc008jbj.1"; exon_number "8"; FPKM "12.8769808138"; frac "1.000000"; conf_lo "10.220662"; conf_hi "15.533299"; cov "0.731412"; chr2 Cufflinks exon 32076600 32076704 1000 + . gene_id "uc008jeo.1"; transcript_id "uc008jeo.1"; exon_number "21"; FPKM "43.8860660433"; frac "0.911093"; conf_lo "40.407190"; conf_hi "47.364942"; cov "2.492727"; chr2 Cufflinks exon 32546710 32546774 1000 - . gene_id "uc008jgm.1"; transcript_id "uc008jgm.1"; exon_number "12"; FPKM "8.1366623064"; frac "1.000000"; conf_lo "5.496780"; conf_hi "10.776544"; cov "0.462162"; chr2 Cufflinks exon 35574280 35574458 1000 + . gene_id "uc008jkv.1"; transcript_id "uc008jkv.1"; exon_number "6"; FPKM "2.0012109810"; frac "0.141121"; conf_lo "1.688896"; conf_hi "2.313526"; cov "0.113669"; chr2 Cufflinks exon 117127697 117127757 1000 - . gene_id "uc008lrl.1"; transcript_id "uc008lrl.1"; exon_number "14"; FPKM "1.6760710643"; frac "0.685093"; conf_lo "1.109659"; conf_hi "2.242483"; cov "0.095201"; chr2 Cufflinks exon 122435405 122435623 1000 - . gene_id "uc008maw.1"; transcript_id "uc008maw.1"; exon_number "8"; FPKM "10.5679023498"; frac "1.000000"; conf_lo "7.636894"; conf_hi "13.498911"; cov "0.600257"; chr2 Cufflinks exon 130265172 130265261 1000 + . gene_id "uc008mja.1"; transcript_id "uc008mja.1"; exon_number "9"; FPKM "3.6318426438"; frac "0.287992"; conf_lo "2.815837"; conf_hi "4.447848"; cov "0.206289"; chr2 Cufflinks exon 152702303 152702428 1000 + . gene_id "uc008ngq.1"; transcript_id "uc008ngq.1"; exon_number "7"; FPKM "2.5312142816"; frac "0.526901"; conf_lo "1.108909"; conf_hi "3.953519"; cov "0.143773"; chr2 Cufflinks exon 158262739 158262887 1000 + . gene_id "uc008nqh.1"; transcript_id "uc008nqh.1"; exon_number "8"; FPKM "5.0001206267"; frac "1.000000"; conf_lo "3.934091"; conf_hi "6.066150"; cov "0.284007"; chr2 Cufflinks exon 178152211 178152296 1000 + . gene_id "uc008ohq.1"; transcript_id "uc008ohq.1"; exon_number "3"; FPKM "1.6796903776"; frac "1.000000"; conf_lo "0.491970"; conf_hi "2.867411"; cov "0.095406"; chr3 Cufflinks exon 97500913 97501137 1000 - . gene_id "uc008qpe.1"; transcript_id "uc008qpe.1"; exon_number "7"; FPKM "4.1738869883"; frac "0.398377"; conf_lo "3.671923"; conf_hi "4.675851"; cov "0.237077"; chr3 Cufflinks exon 101987874 101987902 1000 - . gene_id "uc008qrt.1"; transcript_id "uc008qrt.1"; exon_number "4"; FPKM "0.6428024028"; frac "1.000000"; conf_lo "0.000000"; conf_hi "1.551862"; cov "0.036511"; chr3 Cufflinks exon 127258214 127258303 1000 + . gene_id "uc008rhf.1"; transcript_id "uc008rhf.1"; exon_number "2"; FPKM "0.4060755145"; frac "0.353557"; conf_lo "0.120085"; conf_hi "0.692066"; cov "0.023065"; chr3 Cufflinks exon 144790795 144790854 1000 + . gene_id "uc008rqi.1"; transcript_id "uc008rqi.1"; exon_number "5"; FPKM "1.1258808773"; frac "0.289434"; conf_lo "0.699104"; conf_hi "1.552658"; cov "0.063950"; chr4 Cufflinks exon 17978869 17981846 1000 + . gene_id "uc008sbv.1"; transcript_id "uc008sbv.1"; exon_number "5"; FPKM "0.6623587694"; frac "0.585087"; conf_lo "0.270053"; conf_hi "1.054665"; cov "0.037622"; chr4 Cufflinks exon 21711840 21711940 1000 + . gene_id "uc008scz.1"; transcript_id "uc008scz.1"; exon_number "5"; FPKM "0.9584930367"; frac "0.150841"; conf_lo "0.742054"; conf_hi "1.174932"; cov "0.054442"; chr4 Cufflinks exon 108353507 108353731 1000 - . gene_id "uc008ubn.1"; transcript_id "uc008ubn.1"; exon_number "9"; FPKM "2.6286767383"; frac "1.000000"; conf_lo "1.111010"; conf_hi "4.146344"; cov "0.149309"; chr4 Cufflinks exon 131325668 131325803 1000 - . gene_id "uc008vab.1"; transcript_id "uc008vab.1"; exon_number "2"; FPKM "4.0813960015"; frac "1.000000"; conf_lo "2.890730"; conf_hi "5.272062"; cov "0.231823"; chr4 Cufflinks exon 153530641 153530927 1000 + . gene_id "uc008wbi.1"; transcript_id "uc008wbi.1"; exon_number "12"; FPKM "21.2412511761"; frac "1.000000"; conf_lo "16.217040"; conf_hi "26.265462"; cov "1.206502"; chr5 Cufflinks exon 3631589 3631765 1000 + . gene_id "uc008whf.1"; transcript_id "uc008whf.1"; exon_number "19"; FPKM "4.6386616700"; frac "0.517324"; conf_lo "3.723563"; conf_hi "5.553760"; cov "0.263476"; chr5 Cufflinks exon 3992046 3992138 1000 + . gene_id "uc008wid.1"; transcript_id "uc008wid.1"; exon_number "15"; FPKM "23.3742995121"; frac "0.874843"; conf_lo "21.278988"; conf_hi "25.469611"; cov "1.327659"; chr5 Cufflinks exon 34223636 34223836 1000 + . gene_id "uc008xbk.1"; transcript_id "uc008xbk.1"; exon_number "12"; FPKM "4.1101744570"; frac "0.642098"; conf_lo "2.270677"; conf_hi "5.949672"; cov "0.233458"; chr5 Cufflinks exon 115734400 115734621 1000 + . gene_id "uc008zdo.1"; transcript_id "uc008zdo.1"; exon_number "3"; FPKM "15.3221708908"; frac "1.000000"; conf_lo "11.506469"; conf_hi "19.137873"; cov "0.870299"; chr5 Cufflinks exon 137807769 137808016 1000 + . gene_id "uc009aci.1"; transcript_id "uc009aci.1"; exon_number "12"; FPKM "0.7189248975"; frac "0.533440"; conf_lo "0.000000"; conf_hi "1.543846"; cov "0.040835"; chr6 Cufflinks transcript 17015149 17055825 1000 + . gene_id "uc009azi.1"; transcript_id "uc009azi.1"; FPKM "12.3429992456"; frac "1.000000"; conf_lo "9.242902"; conf_hi "15.443097"; cov "0.701082"; chr6 Cufflinks exon 15361026 15361102 1000 + . gene_id "uc009ayz.1"; transcript_id "uc009ayz.1"; exon_number "14"; FPKM "4.1692596952"; frac "0.281345"; conf_lo "2.894471"; conf_hi "5.444049"; cov "0.236814"; chr6 Cufflinks exon 115576309 115576426 1000 - . gene_id "uc009dix.1"; transcript_id "uc009dix.1"; exon_number "8"; FPKM "34.7320589881"; frac "0.628311"; conf_lo "31.195284"; conf_hi "38.268834"; cov "1.972780"; chr6 Cufflinks exon 117820274 117822784 1000 + . gene_id "uc009dld.1"; transcript_id "uc009dld.1"; exon_number "3"; FPKM "8.2141924772"; frac "1.000000"; conf_lo "5.778655"; conf_hi "10.649730"; cov "0.466566"; chr6 Cufflinks exon 121331667 121331759 1000 - . gene_id "uc009don.1"; transcript_id "uc009don.1"; exon_number "4"; FPKM "0.9373248338"; frac "0.255959"; conf_lo "0.597786"; conf_hi "1.276864"; cov "0.053240"; chr6 Cufflinks exon 134837648 134837803 1000 - . gene_id "uc009ekw.1"; transcript_id "uc009ekw.1"; exon_number "2"; FPKM "3.4342255434"; frac "0.337007"; conf_lo "2.099159"; conf_hi "4.769292"; cov "0.195064"; chr7 Cufflinks exon 19628774 19628924 1000 + . gene_id "uc009fkg.1"; transcript_id "uc009fkg.1"; exon_number "14"; FPKM "3.4380795645"; frac "0.240903"; conf_lo "2.901335"; conf_hi "3.974824"; cov "0.195283"; chr7 Cufflinks transcript 51739887 51740783 1000 + . gene_id "uc009gpo.1"; transcript_id "uc009gpo.1"; FPKM "3.5875651083"; frac "1.000000"; conf_lo "0.658330"; conf_hi "6.516800"; cov "0.203774"; chr7 Cufflinks exon 53085965 53086159 1000 - . gene_id "uc009gxj.1"; transcript_id "uc009gxj.1"; exon_number "6"; FPKM "6.4200658663"; frac "0.543693"; conf_lo "4.666748"; conf_hi "8.173383"; cov "0.364660"; chr7 Cufflinks exon 77546982 77547077 1000 + . gene_id "uc009hnk.1"; transcript_id "uc009hnk.1"; exon_number "7"; FPKM "0.4622078998"; frac "0.405823"; conf_lo "0.077413"; conf_hi "0.847003"; cov "0.026253"; chr7 Cufflinks exon 82788205 82788350 1000 + . gene_id "uc009hwu.1"; transcript_id "uc009hwu.1"; exon_number "1"; FPKM "0.6859341657"; frac "0.576962"; conf_lo "0.055268"; conf_hi "1.316600"; cov "0.038961"; chr7 Cufflinks exon 85984891 85985078 1000 - . gene_id "uc009hxo.1"; transcript_id "uc009hxo.1"; exon_number "3"; FPKM "3.0017741434"; frac "1.000000"; conf_lo "1.397258"; conf_hi "4.606290"; cov "0.170501"; chr7 Cufflinks exon 148509981 148510078 1000 - . gene_id "uc009kkn.1"; transcript_id "uc009kkn.1"; exon_number "11"; FPKM "32.9197864125"; frac "1.000000"; conf_lo "27.375094"; conf_hi "38.464479"; cov "1.869843"; chr9 Cufflinks exon 15330072 15330148 1000 + . gene_id "uc009ogc.1"; transcript_id "uc009ogc.1"; exon_number "2"; FPKM "1.0060367764"; frac "1.000000"; conf_lo "0.000000"; conf_hi "2.428788"; cov "0.057143"; chr9 Cufflinks transcript 21069743 21078812 1000 + . gene_id "uc009okt.1"; transcript_id "uc009okt.1"; FPKM "7.9134805855"; frac "0.623402"; conf_lo "5.930640"; conf_hi "9.896321"; cov "0.449485"; chr9 Cufflinks exon 57867100 57867303 1000 + . gene_id "uc009pwa.1"; transcript_id "uc009pwa.1"; exon_number "4"; FPKM "0.5359102332"; frac "1.000000"; conf_lo "0.000000"; conf_hi "1.293802"; cov "0.030440"; chr9 Cufflinks exon 49314958 49315758 1000 - . gene_id "uc009pje.1"; transcript_id "uc009pje.1"; exon_number "2"; FPKM "156.0206032233"; frac "0.793945"; conf_lo "147.369898"; conf_hi "164.671308"; cov "8.861965"; chr9 Cufflinks exon 106815438 106815604 1000 - . gene_id "uc009rkv.1"; transcript_id "uc009rkv.1"; exon_number "12"; FPKM "5.4023275754"; frac "1.000000"; conf_lo "4.337713"; conf_hi "6.466942"; cov "0.306852"; chr9 Cufflinks exon 119703054 119703292 1000 - . gene_id "uc009sbk.1"; transcript_id "uc009sbk.1"; exon_number "15"; FPKM "0.0814657030"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.244397"; cov "0.004627";