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view sappDocker/locustagger.xml @ 32:7b519ee3ea3b draft

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author jjkoehorst
date Wed, 29 Jun 2016 01:37:28 -0400
parents 957156367442
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<tool id="DLocus" name="Locus tags inference from GBK import" version="0.1">
	<description>Locus tagger inference from original annotation</description>
	<requirements>
		<container type="docker">jjkoehorst/sappdocker:LOCUSTAGGER</container>
	</requirements>
	<command interpreter="docker">java -jar /locustagger/target/LocusTagger-0.1-jar-with-dependencies.jar
		'-input' '$input' -format 'TURTLE' -output '$output' -prefix '$prefix'</command>
	<inputs>
		<param format="ttl" label="RDF file" name="input" type="data"/>
		<param format="text" label="PREFIX identifier" name="prefix" size="60" type="text"/>
	</inputs>
	<outputs>
		<data format="ttl" label="LocusTagger: ${input.name}" name="output"/>
	</outputs>
	<help>Locus tag inference from original genbank/embl that was converted
		to RDF
	</help>
</tool>