diff arriba_get_filters.xml @ 5:005b200c8841 draft

"planemo upload for repository https://github.com/jj-umn/tools-iuc/tree/arriba/tools/arriba commit bdefea23247f7d999b96e232ce810e2887338680"

--- a/arriba_get_filters.xml	Sat Oct 09 15:41:49 2021 +0000
+++ b/arriba_get_filters.xml	Sun Oct 10 13:00:45 2021 +0000
@@ -34,8 +34,8 @@
         </param>
     </inputs>
     <outputs>
-        <data name="blacklist" format="tabular" label="${tool.name} ${arriba_reference_name} blacklist.tsv"/>
-        <data name="known_fusions" format="tabular" label="${tool.name} ${arriba_reference_name} known_fusions.tsv"/>
+        <data name="blacklist" format="tabular.gz" label="${tool.name} ${arriba_reference_name} blacklist.tsv.gz"/>
+        <data name="known_fusions" format="tabular.gz" label="${tool.name} ${arriba_reference_name} known_fusions.tsv.gz"/>
         <data name="protein_domains" format="gff3" label="${tool.name} ${arriba_reference_name} protein_domains.gff3"/>
         <data name="cytobands" format="tabular" label="${tool.name} ${arriba_reference_name} cytobands.tsv"/>
     </outputs>
@@ -50,12 +50,21 @@
         </test>
     </tests>
     <help><![CDATA[
-** Arriba **
+**Arriba Get Filters**
 
 Arriba_ is a fast tool to search for aberrant transcripts such as gene fusions.
 It is based on chimeric alignments found by the STAR RNA-Seq aligner.
 
+The **Arriba Get Filters** tool adds the following Arriba distribution input_files_ to your galaxy history:
+
+  - blacklist
+  - known_fusions
+  - protein_domains
+  - cytobands
+
+
 .. _Arriba: https://arriba.readthedocs.io/en/latest/
+.. _input_files: https://arriba.readthedocs.io/en/latest/input-files/
 
 ]]></help>
     <expand macro="citations" />