Mercurial > repos > jjohnson > arriba

diff arriba_download_reference.xml @ 3:2d32e6c86c48 draft

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"planemo upload for repository https://github.com/jj-umn/tools-iuc/tree/arriba/tools/arriba commit b4882afed9ec678b576f126907094c77c03eae96"
author jjohnson
date Fri, 08 Oct 2021 20:44:25 +0000
parents 7420753b0671
children 77021ad5037d
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--- a/arriba_download_reference.xml	Fri Oct 08 19:23:48 2021 +0000
+++ b/arriba_download_reference.xml	Fri Oct 08 20:44:25 2021 +0000
@@ -10,8 +10,8 @@
     BASE_DIR=\$(dirname \$(dirname `which arriba`)) &&
     REF_SCRIPT=`find \$BASE_DIR -name 'download_references.sh'` &&
     \$REF_SCRIPT '$arriba_reference_name' &&
-    cp *.fa* > '$genome_fasta' &&
-    cp *.gtf* > '$genome_gtf' &&
+    cp *.fa*  '$genome_fasta' &&
+    cp *.gtf*  '$genome_gtf' &&
     mv STAR*/* '$star_index.extra_files_path'
     ]]></command>
     <inputs>