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view tool_dependencies.xml @ 1:34a799d173f7

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Add tool_dependencies and functional test
author Jim Johnson <jj@umn.edu>
date Fri, 07 Sep 2012 13:52:03 -0500
parents
children cca0838c1597
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<?xml version="1.0"?>
<tool_dependency>
    <package name="cd-hit" version="4.6.1">
        <install version="1.0">
            <actions>
                <action type="download_by_url">https://cdhit.googlecode.com/files/cd-hit-v4.6.1-2012-08-27.tgz</action>
                <action type="shell_command">make openmp=yes</action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
These links provide information for building the cdhit package:

http://weizhong-lab.ucsd.edu/cd-hit/

https://code.google.com/p/cdhit/

https://code.google.com/p/cdhit/source/browse/README

        </readme>
    </package>
</tool_dependency>