Mercurial > repos > jjohnson > contig_annotation_tool

annotate test-data/cached_locally/cat_database.loc @ 0:ad7507073c3f draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cat commit f80f020c77d04c2e13b89aaea3d784314b940931-dirty
author jjohnson
date Sun, 24 Nov 2019 21:56:00 -0500
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children 18ece3d5bcde
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ad7507073c3f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cat commit f80f020c77d04c2e13b89aaea3d784314b940931-dirty
jjohnson
parents:
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1 ## A typical download from https://tbb.bio.uu.nl/bastiaan/CAT_prepare/CAT_prepare_20190719.tar.gz
ad7507073c3f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cat commit f80f020c77d04c2e13b89aaea3d784314b940931-dirty
jjohnson
parents:
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2 # ls CAT_prepare_20190719/
ad7507073c3f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cat commit f80f020c77d04c2e13b89aaea3d784314b940931-dirty
jjohnson
parents:
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3 # 2019-07-19.CAT_prepare.fresh.log
ad7507073c3f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cat commit f80f020c77d04c2e13b89aaea3d784314b940931-dirty
jjohnson
parents:
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4 # 2019-07-19_CAT_database
ad7507073c3f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cat commit f80f020c77d04c2e13b89aaea3d784314b940931-dirty
jjohnson
parents:
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5 # 2019-07-19_taxonomy
ad7507073c3f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cat commit f80f020c77d04c2e13b89aaea3d784314b940931-dirty
jjohnson
parents:
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6 #value name database_folder taxonomy_folder
ad7507073c3f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cat commit f80f020c77d04c2e13b89aaea3d784314b940931-dirty
jjohnson
parents:
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7 #2019-07-19_CAT_database 2019-07-19_CAT_database /opt/galaxy/tool-data/cat_database/CAT_prepare_20190719/2019-07-19_CAT_database /opt/galaxy/tool-data/cat_database/CAT_prepare_20190719/2019-07-19_taxonomy
ad7507073c3f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cat commit f80f020c77d04c2e13b89aaea3d784314b940931-dirty
jjohnson
parents:
diff changeset
8 CAT_database_test CAT_database_test ${__HERE__}/CAT_prepare_test/CAT_database ${__HERE__}/CAT_prepare_test/taxonomy