comparison cat_contigs.xml @ 3:18ece3d5bcde draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cat commit 3febcc9ba3d3717877c36bf96742209012a13ac4-dirty

2:9a01840eac52

                <assert_contents>
                    <has_text text="contig_38063" />
                </assert_contents>
            </output>
        </test>
    </tests>
    <help><![CDATA[
**CAT contigs**
Classifiy metagenomics contigs.

3:18ece3d5bcde

                <assert_contents>
                    <has_text text="contig_38063" />
                </assert_contents>
            </output>
        </test>
        <test>
            <param name="contigs_fasta" ftype="fasta" value="contigs.fasta"/>
            <expand macro="test_catdb"/>
            <param name="select_outputs" value="predicted_proteins_faa"/>
            <conditional name="names">
                <param name="add_names" value="both"/>
            </conditional>
            <param name="summarise" value="classification"/>
            <output name="predicted_proteins_faa">
                <assert_contents>
                    <has_text text=">contig_9952" />
                </assert_contents>
            </output>
            <output name="orf2lca_names">
                <assert_contents>
                    <has_text text="Listeria" />
                </assert_contents>
            </output>
            <output name="classification_summary">
                <assert_contents>
                    <has_text text="Listeria" />
                </assert_contents>
            </output>
        </test>
    </tests>
    <help><![CDATA[
**CAT contigs**
Classifiy metagenomics contigs.