comparison tabpad.py @ 2:9a01840eac52 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cat commit 6b978e61a7f66160f2577d907f52dd641f103986-dirty

1:86cd2e70b0dc

def padfile(infile, outfile, fieldcnt=None):
    with open(infile, 'r') as fh:
        out = open(outfile, 'w')
        tabs = '\t' * fieldcnt if fieldcnt is not None else None
        for i, txtline in enumerate(fh):
            line = txtline.rstrip('\r\n')
            fields = line.split('\t')
            if not tabs:
                tabs = '\t' * len(fields)
            out.write('%s%s\n' % (line, tabs[len(fields):]))
        out.close()


def fieldcount(infile):
    fieldcnt = 0

2:9a01840eac52

def padfile(infile, outfile, fieldcnt=None):
    with open(infile, 'r') as fh:
        out = open(outfile, 'w')
        commentlines = []
        tabs = '\t' * fieldcnt if fieldcnt is not None else None
        def pad_line(txtline, tabs=None):
            line = txtline.rstrip('\r\n')
            fields = line.split('\t')
            if not tabs:
                tabs = '\t' * len(fields)
            out.write('%s%s\n' % (line, tabs[len(fields):]))
        for i, txtline in enumerate(fh):
            if txtline.lstrip().startswith('#'):
                commentlines.append(txtline)
            else:
                if commentlines:
                    for i in range(len(commentlines)-1):
                        out.write(commentlines[i])
                    pad_line(commentlines[-1], tabs=tabs)
                    commentlines = []
                pad_line(txtline, tabs=tabs)
        out.close()


def fieldcount(infile):
    fieldcnt = 0