Mercurial > repos > jjohnson > contig_annotation_tool

diff cat_bins.xml @ 2:9a01840eac52 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cat commit 6b978e61a7f66160f2577d907f52dd641f103986-dirty
author jjohnson
date Mon, 25 Nov 2019 15:09:24 -0500
parents 86cd2e70b0dc
children 18ece3d5bcde
line wrap: on
line diff
--- a/cat_bins.xml	Sun Nov 24 22:35:05 2019 -0500
+++ b/cat_bins.xml	Mon Nov 25 15:09:24 2019 -0500
@@ -24,6 +24,10 @@
     @USE_INTERMEDIATES@
     @CUSTOM_SETTINGS@
     && @TXT2TSV@ *.ORF2LCA.txt *.bin2classification.txt
+    #if len($mags) > 1:
+        #set pat = '$' + '{i/concatenated./}'
+        && (for i in *.concatenated.*; do ln -s "\$i" "${pat}"; done)
+    #end if
     @ADD_NAMES@
     @SUMMARISE@
     ]]></command>