Mercurial > repos > jjohnson > contig_annotation_tool

diff cat_bins.xml @ 4:aaeb63501369 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cat commit ec15da3a30507841856303de991cbe80c65128fd-dirty
author jjohnson
date Wed, 27 Nov 2019 10:27:23 -0500
parents 18ece3d5bcde
children 226949352e31
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--- a/cat_bins.xml	Tue Nov 26 15:42:14 2019 -0500
+++ b/cat_bins.xml	Wed Nov 27 10:27:23 2019 -0500
@@ -23,6 +23,7 @@
     @CAT_DB@
     @USE_INTERMEDIATES@
     @CUSTOM_SETTINGS@
+    @DIAMOND_OPTIONS@
     && @TXT2TSV@ *.ORF2LCA.txt *.bin2classification.txt
     #if len($mags) > 1:
         #set pat = '$' + '{i/concatenated./}'
@@ -36,6 +37,7 @@
         <expand macro="cat_db" />
         <expand macro="use_intermediates" />
         <expand macro="custom_settings" />
+        <expand macro="diamond_options" />
         <expand macro="add_names" />
         <expand macro="summarise" />
         <expand macro="select_bat_outputs" />