Mercurial > repos > jjohnson > contig_annotation_tool

diff cat_contigs.xml @ 4:aaeb63501369 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cat commit ec15da3a30507841856303de991cbe80c65128fd-dirty
author jjohnson
date Wed, 27 Nov 2019 10:27:23 -0500
parents 18ece3d5bcde
children 226949352e31
line wrap: on
line diff
--- a/cat_contigs.xml	Tue Nov 26 15:42:14 2019 -0500
+++ b/cat_contigs.xml	Wed Nov 27 10:27:23 2019 -0500
@@ -10,6 +10,7 @@
     @CAT_DB@
     @USE_INTERMEDIATES@
     @CUSTOM_SETTINGS@
+    @DIAMOND_OPTIONS@
     && @TXT2TSV@ *.ORF2LCA.txt *.contig2classification.txt
     @ADD_NAMES@
     @SUMMARISE@
@@ -19,6 +20,7 @@
         <expand macro="cat_db" />
         <expand macro="use_intermediates" />
         <expand macro="custom_settings" />
+        <expand macro="diamond_options" />
         <expand macro="add_names" />
         <expand macro="summarise" />
         <expand macro="select_cat_outputs" />