Mercurial > repos > jjohnson > contig_annotation_tool

diff test-data/test_contig.contig2classification.names.txt @ 0:ad7507073c3f draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cat commit f80f020c77d04c2e13b89aaea3d784314b940931-dirty
author jjohnson
date Sun, 24 Nov 2019 21:56:00 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_contig.contig2classification.names.txt	Sun Nov 24 21:56:00 2019 -0500
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+# contig	classification	reason	lineage	lineage scores	superkingdom	phylum	class	order	family	genus	species
+contig_38063	classified	based on 1/2 ORFs	1;131567;2;1783272;1239;91061;1385;186820;1637;1639	1.00;1.00;1.00;1.00;1.00;1.00;1.00;1.00;1.00;1.00	Bacteria: 1.00	Firmicutes: 1.00	Bacilli: 1.00	Bacillales: 1.00	Listeriaceae: 1.00	Listeria: 1.00	Listeria monocytogenes: 1.00
+contig_44250	classified	based on 1/2 ORFs	1;131567;2;1224;1236;135623;641;662;666	1.00;1.00;1.00;1.00;1.00;1.00;1.00;1.00;1.00	Bacteria: 1.00	Proteobacteria: 1.00	Gammaproteobacteria: 1.00	Vibrionales: 1.00	Vibrionaceae: 1.00	Vibrio: 1.00	Vibrio cholerae: 1.00
+contig_9952	classified	based on 1/5 ORFs	1;131567;2;1783272;1239;91061*	1.00;1.00;1.00;1.00;1.00;1.00	Bacteria: 1.00	Firmicutes: 1.00	Bacilli*: 1.00	not classified	not classified	not classified	not classified