# HG changeset patch
# User jjohnson
# Date 1574868443 18000
# Node ID aaeb635013691a2b4b8dde9aa1c7bf5e84f295e5
# Parent 18ece3d5bcdee7b6ecfa3ab3872ac96932771f06
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cat commit ec15da3a30507841856303de991cbe80c65128fd-dirty
diff -r 18ece3d5bcde -r aaeb63501369 cat_bins.xml
--- a/cat_bins.xml Tue Nov 26 15:42:14 2019 -0500
+++ b/cat_bins.xml Wed Nov 27 10:27:23 2019 -0500
@@ -23,6 +23,7 @@
@CAT_DB@
@USE_INTERMEDIATES@
@CUSTOM_SETTINGS@
+ @DIAMOND_OPTIONS@
&& @TXT2TSV@ *.ORF2LCA.txt *.bin2classification.txt
#if len($mags) > 1:
#set pat = '$' + '{i/concatenated./}'
@@ -36,6 +37,7 @@
+
diff -r 18ece3d5bcde -r aaeb63501369 cat_contigs.xml
--- a/cat_contigs.xml Tue Nov 26 15:42:14 2019 -0500
+++ b/cat_contigs.xml Wed Nov 27 10:27:23 2019 -0500
@@ -10,6 +10,7 @@
@CAT_DB@
@USE_INTERMEDIATES@
@CUSTOM_SETTINGS@
+ @DIAMOND_OPTIONS@
&& @TXT2TSV@ *.ORF2LCA.txt *.contig2classification.txt
@ADD_NAMES@
@SUMMARISE@
@@ -19,6 +20,7 @@
+
diff -r 18ece3d5bcde -r aaeb63501369 cat_prepare.xml
--- a/cat_prepare.xml Tue Nov 26 15:42:14 2019 -0500
+++ b/cat_prepare.xml Wed Nov 27 10:27:23 2019 -0500
@@ -23,6 +23,8 @@
**CAT prepare**
Prepare CAT reference data for classifying metagomic contigs or genome assemblies.
+This requires over a 100GB of RAM, 250GB of disk space, and up to 24 hours.
+
@COMMON_HELP@
]]>
diff -r 18ece3d5bcde -r aaeb63501369 macros.xml
--- a/macros.xml Tue Nov 26 15:42:14 2019 -0500
+++ b/macros.xml Wed Nov 27 10:27:23 2019 -0500
@@ -56,7 +56,6 @@
-
@@ -85,6 +84,37 @@
--range $range
--fraction $fraction
]]>
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