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annotate tumor.bam.sclip.txt @ 1:4f6952e0af48 default tip

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CREST - add crest.loc.sample
author Jim Johnson <jj@umn.edu>
date Wed, 08 Feb 2012 16:08:01 -0600
parents acc8d8bfeb9a
children
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1 4 125892327 + HWUSI-EAS1591_6113C:3:17:12332:19420#0 CC CC
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2 4 125892458 + HWUSI-EAS1591_6113C:4:91:6281:9961#0 GACTAACCACCACGGTACATGTTTTCCTATGTAAAAAACCTGCACATTCTACACATGTATCCCAGAACTTAAAGTAAAACAC B@C@?:CC>CCBCCCCACBCDCCCCCC;<:<9CCCCC@CCCCCBCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCAC
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3 4 125893225 + HWI-EAS90_614M9:5:18:17924:10181#0 CCCTCCTGGGTTCAAGTGATTCTCCTGCCTCTACCTCCCGAGTAGCTGGGATTACAGGTGCCCACCACCATGCCTGGCTAA #######@@7@:8@><16+6(B>AABCAA3AB@CC6CCCCCCCDCCCCCCBCCDCCCCCCCCCCCCDCCCCCCCCCCCCCC
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4 4 125893227 + HWI-EAS90_614M9:4:32:9763:4986#0 CTCCTGGGTTCAAGTGATTCTCCTGCCTCTACCT CCCC@CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
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5 4 125893227 + HWI-EAS90_614M9:5:1:12903:5535#0 CTCCTGGGTTCAAGTGATTCTCCTGCCTCTACCTCCCGAGTAGCTGGGATTACAGGTGCCCACCACCATGCCTGGCTAATTTT B;@@>DABBB>DBAAAB@BABDDDDCCBCDACCBCCCCCCCBCCCCCCCCCCCCCCCCCCCCCCBCCCCCCCCCCCCCCCCCC
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6 4 125893227 + HWUSI-EAS1591_6113C:2:117:3095:2051#0 CTCCTGGGTTCAAGTGATTCTCCTGCCTCTACCTCCCGAGTAGCTGGGATTACAGGTGCCCACCACCATGCCTGGCTAAT 65977A::??BB>?BA8???=BDCCCCBCCCCCBCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCDCCCCCCCCCCCCCCC
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7 4 125893227 + HWUSI-EAS1591_6113C:4:39:14328:11130#0 CTCCTGGGTTCAAGTGATTCTCCTG CCCCCCCCCCCCCCCCCCCCCCCCC
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8 4 125893227 + HWUSI-EAS1591_6113C:4:9:4513:12290#0 CTCCTGG CCCCCCC
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9 4 125893365 - HWI-EAS292_102081428:1:66:17910:13190#0 TAACTACTT GFGFDGGGG
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10 4 125893979 - HWUSI-EAS1591_6113C:1:81:16173:11673#0 ATAAAATATTTATATTTTATATATTTGTATTCAAT CCCCCCCCCCCCCCCCCCCCCCCCCCCDCCCCCCC
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11 10 66301086 - HWI-EAS231_614TA:6:108:5679:13132#0 AAACATGGTTCAAATAAATTATTTATAAAGAAG CCCCCCCCCCCCCCCCCBBCCCCCCCCCCCCCC
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12 10 66301086 - HWI-EAS292_102081428:1:76:17776:13382#0 AAACATGGTTCAAATAAATTATTTATAAAGAAG GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
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13 10 66301858 + HWI-EAS231_614TA:1:37:3390:19595#0 ACAGCTACT CCCCCCCCC
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14 10 66301858 + HWI-EAS90_614M9:1:98:9476:6999#0 ACAGCTACTGAAAAGAGAATCATATTCTCTTTT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
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15 10 66301858 + HWI-EAS90_614M9:5:12:2797:13435#0 ACAGCTACTGAAAAGAGAATCATATTCTCTTTTCATAATTTAGAATATGATATATATTTCAAAATATGATA CCCCCCDCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
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16 10 66301858 + HWI-EAS90_614M9:7:110:15112:12998#0 ACAGCTACTGAAAAGAGAATCATATTCTCTTTTCATAATTTAGAATATGATATATATTTCAAAAT CCCCCCBCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
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17 10 66301865 - HWI-EAS231_614TA:4:36:3528:11249#0 TTTGTTCCTTCA CCCCCCCCCCCC
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18 10 66301865 - HWI-EAS231_614TA:5:52:9612:8954#0 CGTAGTTTGTTCCTTCA CCCCCCCCCCCCCCCCC
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19 10 66301865 - HWI-EAS90_614M9:1:118:15320:11068#0 AGCCATGGACCTTGTGGTGGGTTCTTAACAATGGTGAGTCCGGAGTTCTTAACGATGGTGAGTCCGTAGTTTGTTCCTTCA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCDCCCCCCCCCCCCCCCC@CCBCCCDDCCDBCDBCCDBCBCDDD
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20 10 66301865 - HWI-EAS90_614M9:3:104:3717:11676#0 GAGTCCGTAGTTTGTTCCTTCA BBBBBB@9B@878;69?B9AB>
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21 10 66301865 - HWI-EAS90_614M9:4:115:17151:16115#0 AGTCCGGAGTTCTCAACGATGGTGAGTCCGTAGTTTGTTCCTTCA CCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
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22 10 66301865 - HWI-EAS90_614M9:5:27:7334:16234#0 CTTGTGGTGGGTTCTTAACAATGGTGAGTCCGGAGTTCTTAACGATGGTGAGTCCGTAGTTTGTTCCTTCA CCCCCCCDCCCCCCCCCCCCCBCCBCCCDCCCCCCBCCCCCCCCC@CC>CAC@CCBABCADDDBDBBBBBB
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23 10 66301865 - HWI-EAS90_614M9:7:21:19162:4940#0 TTCA CCCC
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24 10 66301865 - HWUSI-EAS1591_6113C:1:24:6705:7145#0 AGCCATGGACCTTGTGGTGGGTTCTTAACAATGGTGAGTCCGGAGTTCTTAACGATGGCGAGTCCGTAGTTTGTTCCTTCA CCCCCCCCCCCCCCCCCDCCCCCCCCCCCCCCCCDCCCDCCCCCCACCCCCCDCCDC98A@C<C?CB9@BA@@BBCBBD@B
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25 10 66301865 - HWUSI-EAS1591_6113C:2:55:7685:7454#0 AGTCCGTAGTTTGTTCCTTCA CCCCCCCCCCCCCCCCCCCCC
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26 10 66301871 - HWI-EAS90_614M9:3:114:11684:16725#0 ATCAAGAAAATTAATAAACCCTAGCCCATAT BBBBBBBBB==BBBBBBBBBBBBBBBBBBBB
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27 10 66302136 + HWI-EAS231_614TA:4:119:4524:15992#0 TAAATTCCGGACACAGTACTACTATGTTGAAGAGGAGTTG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC