# HG changeset patch
# User Jim Johnson <jj@umn.edu>
# Date 1328738881 21600
# Node ID 4f6952e0af48c3e74b0886430ae2043173f6448b
# Parent  acc8d8bfeb9a7b6c4c787e1ec55545853bc5c001
CREST - add crest.loc.sample

diff -r acc8d8bfeb9a -r 4f6952e0af48 tool-data/crest.loc.sample
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/crest.loc.sample	Wed Feb 08 16:08:01 2012 -0600
@@ -0,0 +1,31 @@
+#This is a sample file distributed with Galaxy that enables tools
+#to use a directory of fasta and 2bit genome files for use with CREST. You will
+#need to supply these files and then create a crest.loc file
+#similar to this one (store it in this directory) that points to
+#the directories in which those files are stored. The crest.loc
+#file has this format (white space characters are TAB characters):
+#
+#<unique_build_id>   <display_name>   <fasta_path>	<2bit_path>
+#
+#So, for example, if your crest.loc began like this:
+#
+#hg19	Human (Homo sapiens): hg19	/depot/data2/galaxy/twobit/hg19.fa	/depot/data2/galaxy/twobit/hg19.2bit
+#mm9	Mouse (Mus musculus): mm9	/depot/data2/galaxy/twobit/mm9.fa	/depot/data2/galaxy/twobit/mm9.2bit
+#
+#then your /depot/data2/galaxy/twobit/ directory
+#would need to contain the following fasta and 2bit files:
+#
+#-rw-r--r--  1 james    universe 527388 2005-09-13 10:12 hg19.2bit
+#-rw-r--r--  1 james    universe 527388 2005-09-13 10:12 hg19.fa
+#-rw-r--r--  1 james    universe 269808 2005-09-13 10:12 mm9.2bit
+#-rw-r--r--  1 james    universe 269808 2005-09-13 10:12 mm9.fa
+#
+#Your crest.loc file should include an entry per line for 
+#each file you have stored that you want to be available. Note that 
+#your files should all have the extension '2bit'.
+#
+#Note that for backwards compatibility with workflows, the unique ID of
+#an entry must be the path that was in the original loc file, because that
+#is the value stored in the workflow for that parameter. 
+#
+#hg18	Human (Homo sapiens): hg18	/depot/data2/galaxy/twobit/hg19.fa	/depot/data2/galaxy/twobit/hg19.2bit