Mercurial > repos > jjohnson > crest
changeset 1:4f6952e0af48 default tip
CREST - add crest.loc.sample
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Wed, 08 Feb 2012 16:08:01 -0600 |
| parents | acc8d8bfeb9a |
| children | |
| files | tool-data/crest.loc.sample |
| diffstat | 1 files changed, 31 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/crest.loc.sample Wed Feb 08 16:08:01 2012 -0600 @@ -0,0 +1,31 @@ +#This is a sample file distributed with Galaxy that enables tools +#to use a directory of fasta and 2bit genome files for use with CREST. You will +#need to supply these files and then create a crest.loc file +#similar to this one (store it in this directory) that points to +#the directories in which those files are stored. The crest.loc +#file has this format (white space characters are TAB characters): +# +#<unique_build_id> <display_name> <fasta_path> <2bit_path> +# +#So, for example, if your crest.loc began like this: +# +#hg19 Human (Homo sapiens): hg19 /depot/data2/galaxy/twobit/hg19.fa /depot/data2/galaxy/twobit/hg19.2bit +#mm9 Mouse (Mus musculus): mm9 /depot/data2/galaxy/twobit/mm9.fa /depot/data2/galaxy/twobit/mm9.2bit +# +#then your /depot/data2/galaxy/twobit/ directory +#would need to contain the following fasta and 2bit files: +# +#-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 hg19.2bit +#-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 hg19.fa +#-rw-r--r-- 1 james universe 269808 2005-09-13 10:12 mm9.2bit +#-rw-r--r-- 1 james universe 269808 2005-09-13 10:12 mm9.fa +# +#Your crest.loc file should include an entry per line for +#each file you have stored that you want to be available. Note that +#your files should all have the extension '2bit'. +# +#Note that for backwards compatibility with workflows, the unique ID of +#an entry must be the path that was in the original loc file, because that +#is the value stored in the workflow for that parameter. +# +#hg18 Human (Homo sapiens): hg18 /depot/data2/galaxy/twobit/hg19.fa /depot/data2/galaxy/twobit/hg19.2bit