view cuffdiff_mds_plot.xml @ 3:f109453ecfa2

readCufflinks() parses feature file based on file extension: .gtf/.gff3 Also added gtfFile and genome input to cummerbund_wrapper.xml
author Jim Johnson <jj@umn.edu>
date Fri, 15 Nov 2013 13:39:14 -0600
parents da7241f92ecf
children
line wrap: on
line source

<tool id="cuffdiff_mds_plot" name="Cuffdiff MDS Plot" version="1.0">
  <description>MultiDimensional Scaling (MDS) plot from cuffdiff read_group_tracking</description>
  <command interpreter="perl">
    cuffdiff_mds_plot.pl $input data.tmp $plot
  </command>
  <inputs>
    <param format="tabular" name="input" type="data" label="A cuffdiff2 tracking file"
           help="any of the *.read_group_tracking files produced by cuffdiff2"/>
  </inputs>
  <outputs>
    <data format="png" name="plot" label="${tool.name} on ${on_string}"/>
  </outputs>
  <tests>
    <test>
    </test>
  </tests>
  <help>
    Generates a multidimensional scaling (MDS) plot of a read_group_tracking output file from cuffdiff ver2.
  </help>
</tool>