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view data_manager_conf.xml @ 0:f59e7e242bde draft

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planemo upload commit f80f020c77d04c2e13b89aaea3d784314b940931-dirty
author jjohnson
date Sun, 24 Nov 2019 21:54:57 -0500
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<?xml version="1.0"?>
<data_managers>
  <data_manager tool_file="data_manager/data_manager_cat.xml" id="data_manager_cat" >
    <data_table name="cat_database">  <!-- Defines a Data Table to be modified. -->
      <output> <!-- Handle the output of the Data Manager Tool -->
        <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
        <column name="name" />  <!-- columns that are going to be specified by the Data Manager Tool -->
        <column name="database_folder" output_ref="out_file" >
          <move type="directory" relativize_symlinks="True">
            <src >${database_folder}</target>
            <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">CAT/${database_folder}</target>
          </move>
          <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/CAT/${database_folder}</value_translation>
          <value_translation type="function">abspath</value_translation>
        </column>
        <column name="taxonomy_folder" output_ref="out_file" >
          <move type="directory" relativize_symlinks="True">
            <src >${taxonomy_folder}</target>
            <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">CAT/${taxonomy_folder}</target>
          </move>
          <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/CAT/${taxonomy_folder}</value_translation>
          <value_translation type="function">abspath</value_translation>
        </column>
      </output>
    </data_table>
  </data_manager>
</data_managers>