comparison defuse_trinity_analysis.xml @ 16:bdd93719cede draft

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15:b67c24d902aa

<?xml version="1.0"?>
<tool id="defuse_trinity_analysis" name="Defuse Trinity" version="0.6.1">
  <description>verify fusions with trinity</description>
  <stdio>
    <exit_code range="1:" level="fatal" description="Error" />
  </stdio>
  <command interpreter="python">defuse_trinity_analysis.py --input $defuse_results --transcripts $trinity_transcripts --peptides $trinity_orfs 
  --nbases $nbases --min_pep_len $min_pep_len --ticdist $ticdist --readthrough=$readthrough

16:bdd93719cede

<?xml version="1.0"?>
<tool id="defuse_trinity_analysis" name="Defuse Trinity" version="@DEFUSE_VERSION@.2">
  <description>verify fusions with trinity</description>
    <macros>
        <import>macros.xml</import>
    </macros>
  <stdio>
    <exit_code range="1:" level="fatal" description="Error" />
  </stdio>
  <command interpreter="python">defuse_trinity_analysis.py --input $defuse_results --transcripts $trinity_transcripts --peptides $trinity_orfs 
  --nbases $nbases --min_pep_len $min_pep_len --ticdist $ticdist --readthrough=$readthrough