Mercurial > repos > jjohnson > encyclopedia_fasta_to_prosit_csv
comparison macros.xml @ 6:7003adde5668 draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/encyclopedia/tools/encyclopedia commit 17dcc85ebd7507af5557a1aee4816ac437a3f27b"
| author | jjohnson |
|---|---|
| date | Fri, 21 Aug 2020 16:14:27 -0400 |
| parents | aaca2f8930a2 |
| children | dedfeaab569d |
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| 5:aaca2f8930a2 | 6:7003adde5668 |
|---|---|
| 126 </param> | 126 </param> |
| 127 </xml> | 127 </xml> |
| 128 <token name="@LINK_LIB_INPUT@"><![CDATA[ | 128 <token name="@LINK_LIB_INPUT@"><![CDATA[ |
| 129 #if $library | 129 #if $library |
| 130 #set $l_name = $ln_name($library) | 130 #set $l_name = $ln_name($library) |
| 131 cp '$library' $l_name && | 131 cp '$library' '$l_name' && |
| 132 #else | 132 #else |
| 133 #set $l_name = None | 133 #set $l_name = None |
| 134 #end if | 134 #end if |
| 135 ]]></token> | 135 ]]></token> |
| 136 <token name="@LIB_INPUT@"> | 136 <token name="@LIB_INPUT@"> |
| 492 mzML conversion from RAW requires special options: @MSCONVERT_CMD@ | 492 mzML conversion from RAW requires special options: @MSCONVERT_CMD@ |
| 493 ]]> | 493 ]]> |
| 494 </token> | 494 </token> |
| 495 <token name="@MSCONVERT_HELP@"><![CDATA[ | 495 <token name="@MSCONVERT_HELP@"><![CDATA[ |
| 496 | 496 |
| 497 The MSConvert command can be used to deconvolute DIA raw files. You need to use these options | 497 The MSConvert command can be used to convert and deconvolute DIA raw files to mzML format. You need to use these options: |
| 498 | 498 |
| 499 :: | 499 :: |
| 500 | 500 |
| 501 @MSCONVERT_CMD@ | 501 @MSCONVERT_CMD@ |
| 502 | 502 |