Mercurial > repos > jjohnson > encyclopedia_fasta_to_prosit_csv
comparison encyclopedia_fasta_to_prosit_csv.xml @ 4:91343296dbff draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/encyclopedia/tools/encyclopedia commit 96a023cccea27c30ff61caf271a3c79b92db1873"
| author | jjohnson |
|---|---|
| date | Tue, 07 Jul 2020 11:57:34 -0400 |
| parents | d0202c597434 |
| children |
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| 3:b9a2af09b828 | 4:91343296dbff |
|---|---|
| 2 <description>Create Prosit CSV Input From a Protein FASTA</description> | 2 <description>Create Prosit CSV Input From a Protein FASTA</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements" /> | 6 <expand macro="requirements" /> |
| 7 <command detect_errors="exit_code"><![CDATA[ | 7 <command detect_errors="aggressive"><![CDATA[ |
| 8 EncyclopeDIA -convert -fastatoprositcsv | 8 EncyclopeDIA -convert -fastatoprositcsv |
| 9 -i '$i' | 9 -i '$i' |
| 10 -minCharge $minCharge | 10 -minCharge $minCharge |
| 11 -maxCharge $maxCharge | 11 -maxCharge $maxCharge |
| 12 -defaultCharge $defaultCharge | 12 -defaultCharge $defaultCharge |