Mercurial > repos > jjohnson > encyclopedia_fasta_to_prosit_csv
comparison macros.xml @ 4:91343296dbff draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/encyclopedia/tools/encyclopedia commit 96a023cccea27c30ff61caf271a3c79b92db1873"
| author | jjohnson |
|---|---|
| date | Tue, 07 Jul 2020 11:57:34 -0400 |
| parents | b9a2af09b828 |
| children | aaca2f8930a2 |
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| 3:b9a2af09b828 | 4:91343296dbff |
|---|---|
| 29 #else | 29 #else |
| 30 #return $input1.name | 30 #return $input1.name |
| 31 #end if | 31 #end if |
| 32 #end def | 32 #end def |
| 33 #def clean($name1) | 33 #def clean($name1) |
| 34 ## #set $name_clean = $re.sub('[^\w\-_\.]', '_', $re.sub('(?i[.](fa|fasta|imzml|mzml)$)','', $re.sub('.*/','', $name1.rstrip('.gz')))) | 34 #set $name_clean = $re.sub('[^\w\-_]', '_', $re.sub('(?i)[.](fa|fasta|imzml|mzml)$','', $re.sub('.*/','', $name1.rstrip('.gz')))) |
| 35 ## #set $name_clean = $re.sub('[^\w\-_\.]', '_', $re.sub('.*/','', $name1.rstrip('.gz'))) | |
| 36 #set $name_clean = $re.sub('[^\w\-_\.]', '_', $re.sub('(?i)[.](fa|fasta|imzml|mzml)$','', $re.sub('.*/','', $name1.rstrip('.gz')))) | |
| 37 #return $name_clean | 35 #return $name_clean |
| 38 #end def | 36 #end def |
| 39 #def ln_name($ds) | 37 #def ln_name($ds) |
| 40 #set $ext = '' | 38 #set $ext = '' |
| 41 #if $ds.is_of_type('mzml') | 39 #if $ds.is_of_type('mzml') or $ds.is_of_type('imzml') |
| 42 #set $ext = ".mzML" | 40 #set $ext = ".mzML" |
| 43 #else if $ds.is_of_type('elib') | 41 #else if $ds.is_of_type('elib') |
| 44 #set $ext = ".elib" | 42 #set $ext = ".elib" |
| 45 #else if $ds.is_of_type('dlib') | 43 #else if $ds.is_of_type('dlib') |
| 46 #set $ext = ".dlib" | 44 #set $ext = ".dlib" |