Mercurial > repos > jjohnson > encyclopedia_library_to_blib
comparison encyclopedia_library_to_blib.xml @ 4:4850741d1dff draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/encyclopedia/tools/encyclopedia commit 96a023cccea27c30ff61caf271a3c79b92db1873"
author | jjohnson |
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date | Tue, 07 Jul 2020 11:55:40 -0400 |
parents | 058db6d8a1b3 |
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3:e0d2d05ea5d7 | 4:4850741d1dff |
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2 <description>Convert EncyclopeDIA Library to BLIB for Skyline</description> | 2 <description>Convert EncyclopeDIA Library to BLIB for Skyline</description> |
3 <macros> | 3 <macros> |
4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
5 </macros> | 5 </macros> |
6 <expand macro="requirements" /> | 6 <expand macro="requirements" /> |
7 <command detect_errors="exit_code"><![CDATA[ | 7 <command detect_errors="aggressive"><![CDATA[ |
8 EncyclopeDIA -convert -libtoblib | 8 EncyclopeDIA -convert -libtoblib |
9 -i '$i' | 9 -i '$i' |
10 -o '$output' | 10 -o '$output' |
11 #if $istest == 'yes' | 11 #if $istest == 'yes' |
12 && sqlite3 -readonly '$output' 'SELECT distinct peptideSeq FROM RefSpectra;' > '$test_output' | 12 && sqlite3 -readonly '$output' 'SELECT distinct peptideSeq FROM RefSpectra;' > '$test_output' |