comparison macros.xml @ 5:30f6b9c88ceb draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/encyclopedia/tools/encyclopedia commit 17dcc85ebd7507af5557a1aee4816ac437a3f27b"

4:bd937e4efa04

        </param>
    </xml>
    <token name="@LINK_LIB_INPUT@"><![CDATA[
    #if $library
    #set $l_name = $ln_name($library)
    cp '$library' $l_name &&
    #else
    #set $l_name = None
    #end if
    ]]></token>
    <token name="@LIB_INPUT@">

mzML conversion from RAW requires special options: @MSCONVERT_CMD@
]]>
    </token>
    <token name="@MSCONVERT_HELP@"><![CDATA[

    The MSConvert command can be used to deconvolute DIA raw files. You need to use these options

    ::

      @MSCONVERT_CMD@

5:30f6b9c88ceb

        </param>
    </xml>
    <token name="@LINK_LIB_INPUT@"><![CDATA[
    #if $library
    #set $l_name = $ln_name($library)
    cp '$library' '$l_name' &&
    #else
    #set $l_name = None
    #end if
    ]]></token>
    <token name="@LIB_INPUT@">

mzML conversion from RAW requires special options: @MSCONVERT_CMD@
]]>
    </token>
    <token name="@MSCONVERT_HELP@"><![CDATA[

    The MSConvert command can be used to convert and deconvolute DIA raw files to mzML format. You need to use these options:

    ::

      @MSCONVERT_CMD@