comparison encyclopedia_quantify.xml @ 4:bd937e4efa04 draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/encyclopedia/tools/encyclopedia commit 880d327a6dce00616a0b0b58bcabcea7b58358cc"

3:aa52f0eadc85

            <actions>
                <action name="column_names" type="metadata" default="Protein,NumPeptides,PeptideSequences" />
            </actions>
        </data>
    </outputs>
    <help><![CDATA[

**EncyclopeDIA Quantify**

@ENCYCLOPEDIA_WIKI@

4:bd937e4efa04

            <actions>
                <action name="column_names" type="metadata" default="Protein,NumPeptides,PeptideSequences" />
            </actions>
        </data>
    </outputs>
    <tests>
        <test>
            <param name="scan_inputs" ftype="mzml" value="BCS_hela_wide_500_900_1.mzML,BCS_hela_wide_500_900_2.mzML"/>
            <param name="library" ftype="elib" value="BCS_hela.elib"/>
            <param name="fasta" ftype="fasta" value="uniprot_human.fasta"/>
            <output name="results" ftype="tabular">
                <assert_contents>
                    <has_text text="ESYDDVSSFR"/>
                </assert_contents>
            </output>
            <output name="proteins" ftype="tabular">
                <assert_contents>
                    <has_text text="ESYDDVSSFR"/>
                </assert_contents>
            </output>
        </test>
    </tests>
    <help><![CDATA[

**EncyclopeDIA Quantify**

@ENCYCLOPEDIA_WIKI@