Mercurial > repos > jjohnson > encyclopedia_quantify
comparison macros.xml @ 7:cb69090da7a4 draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/encyclopedia/tools/encyclopedia commit dd611a143e4e003a5fb085cdf93ae477cc5ea0b1-dirty"
author | jjohnson |
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date | Thu, 10 Sep 2020 19:03:08 +0000 |
parents | 30f6b9c88ceb |
children | 66cd307e5f5b |
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6:5a5da160f667 | 7:cb69090da7a4 |
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100 <token name="@FASTA_INPUT@"> | 100 <token name="@FASTA_INPUT@"> |
101 -f '$f_name' | 101 -f '$f_name' |
102 </token> | 102 </token> |
103 | 103 |
104 <xml name="target_fasta"> | 104 <xml name="target_fasta"> |
105 <param name="target_fasta" argument="-t" type="data" format="fasta" label="Target fasta database" optional="true"/> | 105 <param name="target_fasta" argument="-t" type="data" format="fasta" label="Target fasta database" optional="true"> |
106 <param argument="-tp" type="boolean" truevalue="true" falsevalue="false" checked="false" label="target FASTA file contains peptides"/> | 106 <help>Optional - Only analyze this subset of the background fasta proteome</help> |
107 </param> | |
108 <param argument="-tp" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Target FASTA file contains peptides"> | |
109 <help>Rather than full proteins</help> | |
110 </param> | |
107 </xml> | 111 </xml> |
108 <token name="@LINK_TARGET_FASTA@"><![CDATA[ | 112 <token name="@LINK_TARGET_FASTA@"><![CDATA[ |
109 #if $target_fasta | 113 #if $target_fasta |
110 #set $t_name = $ln_name($target_fasta) | 114 #set $t_name = $ln_name($target_fasta) |
111 ln -s '$target_fasta' '$t_name' && | 115 ln -s '$target_fasta' '$t_name' && |