Mercurial > repos > jjohnson > encyclopedia_searchtolib
changeset 7:29309591ca3e draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/encyclopedia/tools/encyclopedia commit dd611a143e4e003a5fb085cdf93ae477cc5ea0b1"
author | jjohnson |
---|---|
date | Wed, 26 Aug 2020 14:45:18 -0400 |
parents | 7efddaece152 |
children | aad27385a532 |
files | encyclopedia_searchtolib.xml |
diffstat | 1 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/encyclopedia_searchtolib.xml Fri Aug 21 16:13:47 2020 -0400 +++ b/encyclopedia_searchtolib.xml Wed Aug 26 14:45:18 2020 -0400 @@ -12,7 +12,7 @@ @LINK_LIB_INPUT@ for SCAN_FILE in `ls -1 inputs/*`; do echo "\$SCAN_FILE" && - EncyclopeDIA -Djava.awt.headless=true -Xmx20g + EncyclopeDIA -Djava.awt.headless=true -Xmx\$[ \${GALAXY_MEMORY_MB:-20480} / 1024 ]g #if not $library -walnut #end if @@ -29,7 +29,7 @@ @SEARCH_OPTIONS@ | tee -a search2lib.log ; done && for TXT in `find inputs/*.mzML.[efw]*[ast].txt`; do TRGT=`echo \$TXT | sed 's/mzML/dia/'`; ln -s \$TXT \$TRGT; done && - EncyclopeDIA -Djava.awt.headless=true -Xmx12g -libexport + EncyclopeDIA -Djava.awt.headless=true -Xmx\$[ \${GALAXY_MEMORY_MB:-20480} / 1024 ]g -libexport #if not $library -pecan #end if