Mercurial > repos > jjohnson > encyclopedia_walnut
comparison macros.xml @ 8:c0af2ce65e32 draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/encyclopedia/tools/encyclopedia commit dd611a143e4e003a5fb085cdf93ae477cc5ea0b1-dirty"
| author | jjohnson |
|---|---|
| date | Thu, 10 Sep 2020 19:03:25 +0000 |
| parents | 0172dfa08216 |
| children | 886a93db834d |
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| 7:7556b19daa48 | 8:c0af2ce65e32 |
|---|---|
| 100 <token name="@FASTA_INPUT@"> | 100 <token name="@FASTA_INPUT@"> |
| 101 -f '$f_name' | 101 -f '$f_name' |
| 102 </token> | 102 </token> |
| 103 | 103 |
| 104 <xml name="target_fasta"> | 104 <xml name="target_fasta"> |
| 105 <param name="target_fasta" argument="-t" type="data" format="fasta" label="Target fasta database" optional="true"/> | 105 <param name="target_fasta" argument="-t" type="data" format="fasta" label="Target fasta database" optional="true"> |
| 106 <param argument="-tp" type="boolean" truevalue="true" falsevalue="false" checked="false" label="target FASTA file contains peptides"/> | 106 <help>Optional - Only analyze this subset of the background fasta proteome</help> |
| 107 </param> | |
| 108 <param argument="-tp" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Target FASTA file contains peptides"> | |
| 109 <help>Rather than full proteins</help> | |
| 110 </param> | |
| 107 </xml> | 111 </xml> |
| 108 <token name="@LINK_TARGET_FASTA@"><![CDATA[ | 112 <token name="@LINK_TARGET_FASTA@"><![CDATA[ |
| 109 #if $target_fasta | 113 #if $target_fasta |
| 110 #set $t_name = $ln_name($target_fasta) | 114 #set $t_name = $ln_name($target_fasta) |
| 111 ln -s '$target_fasta' '$t_name' && | 115 ln -s '$target_fasta' '$t_name' && |