Mercurial > repos > jjohnson > fastq_mcf

annotate README @ 1:b61f1466ce8f default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Add tool_dependencies.xml and test case
author Jim Johnson <jj@umn.edu>
date Mon, 01 Apr 2013 10:28:17 -0500
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
1
b61f1466ce8f Add tool_dependencies.xml and test case
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1
b61f1466ce8f Add tool_dependencies.xml and test case
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2 == ea-utils Galaxy Wrapper ==
b61f1466ce8f Add tool_dependencies.xml and test case
Jim Johnson <jj@umn.edu>
parents:
diff changeset
3
b61f1466ce8f Add tool_dependencies.xml and test case
Jim Johnson <jj@umn.edu>
parents:
diff changeset
4 This is a Galaxy wrapper for some ea-utils tools, fastq-join and sam-stats.
b61f1466ce8f Add tool_dependencies.xml and test case
Jim Johnson <jj@umn.edu>
parents:
diff changeset
5
b61f1466ce8f Add tool_dependencies.xml and test case
Jim Johnson <jj@umn.edu>
parents:
diff changeset
6 ** Installation **
b61f1466ce8f Add tool_dependencies.xml and test case
Jim Johnson <jj@umn.edu>
parents:
diff changeset
7
b61f1466ce8f Add tool_dependencies.xml and test case
Jim Johnson <jj@umn.edu>
parents:
diff changeset
8 Installation from a tool shed provides the necessary tool dependencies.
b61f1466ce8f Add tool_dependencies.xml and test case
Jim Johnson <jj@umn.edu>
parents:
diff changeset
9
b61f1466ce8f Add tool_dependencies.xml and test case
Jim Johnson <jj@umn.edu>
parents:
diff changeset
10 Otherwise, make sure fastq-join and sam-stats are in the path.
b61f1466ce8f Add tool_dependencies.xml and test case
Jim Johnson <jj@umn.edu>
parents:
diff changeset
11 Move the test data files to your galaxy root test-data.
b61f1466ce8f Add tool_dependencies.xml and test case
Jim Johnson <jj@umn.edu>
parents:
diff changeset
12 Move the xml files to a subdirectory of your tools directory and add lines in tool_conf.xml to point to them.
b61f1466ce8f Add tool_dependencies.xml and test case
Jim Johnson <jj@umn.edu>
parents:
diff changeset
13 Restart the Galaxy server.
b61f1466ce8f Add tool_dependencies.xml and test case
Jim Johnson <jj@umn.edu>
parents:
diff changeset
14
b61f1466ce8f Add tool_dependencies.xml and test case
Jim Johnson <jj@umn.edu>
parents:
diff changeset
15 ** Attribution **
b61f1466ce8f Add tool_dependencies.xml and test case
Jim Johnson <jj@umn.edu>
parents:
diff changeset
16
b61f1466ce8f Add tool_dependencies.xml and test case
Jim Johnson <jj@umn.edu>
parents:
diff changeset
17 The ea-utils package and associated documentation can be found at: http://code.google.com/p/ea-utils/
b61f1466ce8f Add tool_dependencies.xml and test case
Jim Johnson <jj@umn.edu>
parents:
diff changeset
18
b61f1466ce8f Add tool_dependencies.xml and test case
Jim Johnson <jj@umn.edu>
parents:
diff changeset
19