comparison resync.xml @ 1:b0ab279b5add default tip

Add test cases

0:751f4938cf0d

    <data format_source="input1" name="output1" label="resync ${input1.name}"/>
    <data format_source="input2" name="output2" label="resync ${input2.name}"/>
  </outputs>
  <tests>
    <test>
    </test>
  </tests>
  <help>
Resynchronize a pair of paired-end fastq files. 

1:b0ab279b5add

    <data format_source="input1" name="output1" label="resync ${input1.name}"/>
    <data format_source="input2" name="output2" label="resync ${input2.name}"/>
  </outputs>
  <tests>
    <test>
      <param name="input1" ftype="fastq" value="reads1.fastqsanger" />
      <param name="input2" ftype="fastq" value="reads2.fastqsanger" />
      <!-- synchronized files should remain unchanged -->
      <output name="output1" file="reads1.fastqsanger" />
      <output name="output2" file="reads2.fastqsanger" />
    </test>
    <test>
      <param name="input1" ftype="fastq" value="reads1.fastqsanger" />
      <param name="input2" ftype="fastq" value="reads_unsync_2.fastqsanger" />
      <output name="output1">
        <!-- unsynchronized files should remove unpaired read -->
        <assert_contents>
          <has_text text="@HWUSI-EAS1737:7:1:4411:1170#CAGATC/1" />
          <not_has_text text="@HWUSI-EAS1737:7:1:16187:1196#CAGATC/1" />
        </assert_contents>
      </output>
      <output name="output2">
        <!-- unsynchronized files should remove unpaired read -->
        <assert_contents>
          <has_text text="@HWUSI-EAS1737:7:1:4411:1170#CAGATC/2" />
          <not_has_text text="@HWUSI-EAS1737:7:1:16187:1196#CAGATC/2" />
        </assert_contents>
      </output>
    </test>
  </tests>
  <help>
Resynchronize a pair of paired-end fastq files.