Mercurial > repos > jjohnson > fastq_sync
comparison pe_sync.xml @ 1:b0ab279b5add default tip
Add test cases
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Wed, 20 Mar 2013 08:26:48 -0500 |
| parents | 751f4938cf0d |
| children |
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| 0:751f4938cf0d | 1:b0ab279b5add |
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| 15 <outputs> | 15 <outputs> |
| 16 <data format="txt" name="output" label="pe-sync report for ${input1.name} and ${input2.name}"/> | 16 <data format="txt" name="output" label="pe-sync report for ${input1.name} and ${input2.name}"/> |
| 17 </outputs> | 17 </outputs> |
| 18 <tests> | 18 <tests> |
| 19 <test> | 19 <test> |
| 20 <param name="input1" ftype="fastq" value="reads1.fastqsanger" /> | |
| 21 <param name="input2" ftype="fastq" value="reads2.fastqsanger" /> | |
| 22 <param name="quickcheck" value="false"/> | |
| 23 <output name="output"> | |
| 24 <assert_contents> | |
| 25 <has_text text="PASSED" /> | |
| 26 </assert_contents> | |
| 27 </output> | |
| 20 </test> | 28 </test> |
| 29 <test> | |
| 30 <param name="input1" ftype="fastq" value="reads1.fastqsanger" /> | |
| 31 <param name="input2" ftype="fastq" value="reads_unsync_2.fastqsanger" /> | |
| 32 <param name="quickcheck" value="false"/> | |
| 33 <output name="output"> | |
| 34 <assert_contents> | |
| 35 <has_text text="FAILED" /> | |
| 36 </assert_contents> | |
| 37 </output> | |
| 38 </test> | |
| 39 | |
| 21 </tests> | 40 </tests> |
| 22 <help> | 41 <help> |
| 23 Paired-end read file synchronization checks if left and right reads are in the same order. | 42 Paired-end read file synchronization checks if left and right reads are in the same order. |
| 24 | 43 |
| 25 The "quick" option will not report the percent of out-of-sync reads | 44 The "quick" option will not report the percent of out-of-sync reads |