Mercurial > repos > jjohnson > fastq_sync

view README @ 1:b0ab279b5add default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Add test cases
author Jim Johnson <jj@umn.edu>
date Wed, 20 Mar 2013 08:26:48 -0500
parents 751f4938cf0d
children
line wrap: on
line source

These tools check and fix synchronization of paired read fastq files.  
Those files may get out of synchronization due to quality filtering.  

These script can handle Casava 1.8.0 style read IDs, and pre 1.8.0 style ids.
Other types of read ID formats may cause a terminal error.