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11
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="gmap" version="0.9.4_9696d0ce8a962f7bb61c4791be5ce44312b81cf8">
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4 <install version="1.0">
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5 <actions>
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6 <action type="shell_command">wget http://research-pub.gene.com/gmap/src/gmap-gsnap-2011-11-30.tar.gz</action>
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7 <action type="shell_command"> ./configure --prefix=bin --with-gmapdb=../gmapdb</action>
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8 <action type="shell_command">make</action>
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9 <action type="move_directory_files">
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10 <source_directory>bin</source_directory>
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11 <destination_directory>$INSTALL_DIR/bin</destination_directory>
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12 </action>
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13 <action type="set_environment">
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14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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15 </action>
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16 </actions>
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17 </install>
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18 <readme>
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19 </readme>
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20 </package>
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21 </tool_dependency>
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