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comparison tool-data/gmap_indices.loc.sample @ 6:3be0e0a858fe

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refactor and update README
author Jim Johnson <jj@umn.edu>
date Tue, 08 Nov 2011 13:22:34 -0600
parents 30d42bb409b8
children
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5:f4b4c1712e39 6:3be0e0a858fe
1 #This is a sample file distributed with Galaxy that enables tools
2 #to use a directory of GMAPDB indexed sequences data files. You will need
3 #to create these data files using gmap_build and then create a gmap_indices.loc file
4 #similar to this one (store it in this directory) that points to
5 #the directories in which those files are stored. The gmap_indices.loc
6 #file has this format (white space characters are TAB characters):
7 #
8 #<unique_build_id> <dbkey> <display_name> <kmers> <map,map> <snp,snp> <file_base_path>
9 #hg18 hg18 hg18 (cmet atoi) 12,13,14,15 splicesites,introns snps /depot/data2/galaxy/gmap/hg18
10 #hg19 hg19 hg19 (cmet atoi) 12,13,14,15 splicesites,introns,snps snps,dbsnp /depot/data2/galaxy/gmap/hg19