# HG changeset patch
# User Jim Johnson <jj@umn.edu>
# Date 1318956675 18000
# Node ID 30d42bb409b8808190b044c11d9957c633f430e4
# Parent  d58d272914e7e7da99c097334899ffd6b60b4ab6
GMAP - add tool-data/gmap_indices.loc.sample

diff -r d58d272914e7 -r 30d42bb409b8 tool-data/gmap_indices.loc.sample
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/gmap_indices.loc.sample	Tue Oct 18 11:51:15 2011 -0500
@@ -0,0 +1,10 @@
+#This is a sample file distributed with Galaxy that enables tools
+#to use a directory of GMAPDB indexed sequences data files.  You will need
+#to create these data files using gmap_build and then create a gmap_indices.loc file 
+#similar to this one (store it in this directory) that points to 
+#the directories in which those files are stored. The gmap_indices.loc 
+#file has this format (white space characters are TAB characters):
+#
+#<unique_build_id>   <dbkey>   <display_name>   <kmers> <map,map>       <snp,snp>       <file_base_path>
+#hg18   hg18    hg18 (cmet atoi)        12,13,14,15     splicesites,introns     snps    /depot/data2/galaxy/gmap/hg18
+#hg19	hg19	hg19 (cmet atoi)	12,13,14,15	splicesites,introns,snps	snps,dbsnp	/depot/data2/galaxy/gmap/hg19