Mercurial > repos > jjohnson > mmuff
comparison Galaxy-Workflow-MMuFF_v1.2.ga @ 2:04e170c09922
Add a workflow for noraml tissue samples.
author | Jim Johnson <jj@umn.edu> |
---|---|
date | Fri, 12 Apr 2013 07:51:45 -0500 |
parents | 6e49aa2461bd |
children | 0b3a14a7b5f1 |
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1:6e49aa2461bd | 2:04e170c09922 |
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1 { | 1 { |
2 "a_galaxy_workflow": "true", | 2 "a_galaxy_workflow": "true", |
3 "annotation": "", | 3 "annotation": "", |
4 "format-version": "0.1", | 4 "format-version": "0.1", |
5 "name": "MMuFF_v1.2", | 5 "name": "MMuFF_Human_v1.2", |
6 "steps": { | 6 "steps": { |
7 "0": { | 7 "0": { |
8 "annotation": "", | 8 "annotation": "Human RNA-seq paired reads left mates", |
9 "id": 0, | 9 "id": 0, |
10 "input_connections": {}, | 10 "input_connections": {}, |
11 "inputs": [ | 11 "inputs": [ |
12 { | 12 { |
13 "description": "", | 13 "description": "Human RNA-seq paired reads left mates", |
14 "name": "Forward reads fastq" | 14 "name": "Forward reads fastq" |
15 } | 15 } |
16 ], | 16 ], |
17 "name": "Input dataset", | 17 "name": "Input dataset", |
18 "outputs": [], | 18 "outputs": [], |
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27 "type": "data_input", | 27 "type": "data_input", |
28 "user_outputs": [] | 28 "user_outputs": [] |
29 }, | 29 }, |
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31 "annotation": "", | 31 "annotation": "Human RNA-seq paired reads right mates", |
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33 "input_connections": {}, | 33 "input_connections": {}, |
34 "inputs": [ | 34 "inputs": [ |
35 { | 35 { |
36 "description": "", | 36 "description": "Human RNA-seq paired reads right mates", |
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38 } | 38 } |
39 ], | 39 ], |
40 "name": "Input dataset", | 40 "name": "Input dataset", |
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57 "inputs": [ | 57 "inputs": [ |
58 { | 58 { |
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60 "name": "VCF file of known variants (dbSNP)" | 60 "name": "VCF file of known variants (dbSNP)" |
61 } | 61 } |
62 ], | 62 ], |
63 "name": "Input dataset", | 63 "name": "Input dataset", |
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75 }, | 75 }, |
76 "3": { | 76 "3": { |
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78 "id": 3, | 78 "id": 3, |
79 "input_connections": {}, | 79 "input_connections": {}, |
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81 { | 81 { |
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83 "name": "VCF file of additional known variants " | 83 "name": "VCF file of additional known variants " |
84 } | 84 } |
85 ], | 85 ], |
86 "name": "Input dataset", | 86 "name": "Input dataset", |
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188 { | 183 { |
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190 "type": "bed" | 185 "type": "bed" |
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